Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g01023 ATGGCGGAGAAGTACAACATGAAGAACCCCGCCGTCAAGCGCATTCTCCAAGAGGTCAAGGAGATGCAGTCCAATCCTTCCGATGATTTCACGAGTCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGCTGTCTATCATGGACGGATCCAATTGCCTTCAGAGTATCCATTCAAACCACCTTCATTTATGTTATTGACGCCTAATGGTCGTTTCGAGACCCAAACAAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACCGCTTTAGTTGCTCTGATTGCATTCATGCCTACCAACCCTAATGGTGCTTTGGGCTCGTTGGACTACAAGAAGGAAGAAAGGCGTACCTTGGCCATCAAATCTCGTGAAGCGCCTCCGAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACACGAGTATATGCTAAGCAAGGCACCCCCTGTTCCTCAACATAGCTCCATACAACTACTTGAAGAAGAGCATTCCAGAGACGAGGAGGCTGAGTCCCAGGCAAATTCCCATAATCCTGAGGCTTTACCTGCTGAAGAGGGGATTCCAGATCAAGCAGGAGATAGAATTGTTGAAGAGGAGGTAGTTGTTGATGATAATCCTCAAGGAGTTGAACCTTCAACGGAGATCCAATCCAGTGTTTCAAGGAACCAGTCGCCCCATAATTCTGGTTTAAGGGTTCAAAATCTGAAGCCGGAGACTAGGATACAGCAAAAGCTTGATGATCATATTTTCACATTGATAGCCATTGGACTTGCCATTGCAAttgtggcccttttgctgaagaagttcgttaaataa 891 0.4366 MAEKYNMKNPAVKRILQEVKEMQSNPSDDFTSLPLEENIFEWQFAIRGPRDTEFEGAVYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQHSSIQLLEEEHSRDEEAESQANSHNPEALPAEEGIPDQAGDRIVEEEVVVDDNPQGVEPSTEIQSSVSRNQSPHNSGLRVQNLKPETRIQQKLDDHIFTLIAIGLAIAIVALLLKKFVK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g01023 296 MobiDBLite consensus disorder prediction 226 260 - -
Aip04g01023 296 PANTHER BNAC01G21910D PROTEIN 6 294 - -
Aip04g01023 296 MobiDBLite consensus disorder prediction 184 214 - -
Aip04g01023 296 MobiDBLite consensus disorder prediction 184 198 - -
Aip04g01023 296 CDD UBCc 12 151 IPR000608 -
Aip04g01023 296 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Aip04g01023 296 Gene3D Ubiquitin Conjugating Enzyme 1 173 IPR016135 -
Aip04g01023 296 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 294 - -
Aip04g01023 296 SMART ubc_7 13 173 - -
Aip04g01023 296 MobiDBLite consensus disorder prediction 234 260 - -
Aip04g01023 296 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Aip04g01023 296 SUPERFAMILY UBC-like 11 133 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g01023 Aip-Chr4 14666849 14669718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g01023 3 296 Miscellaneous Gene Families AT3G17000 61.873 3.95e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g01023 K10578 - gmx:100798396 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01023 04 14666849 14669718 Aip04g01023 04 14666849 14669718 ECH