Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00962 ATGGTGGTAGCTTCACCCAATTCAATCCAAACCGAAAAGATTGTATCCATCAACCTTCCCACCAAAGACTTATCCAAAGAAAGAGCAACGGTTGCAAAGCTGATCGTGAAAGCGAGCGAAGAGTATGGATTCTTCAACGTCATCAACCACCGGATTCCTCAAGACATAATAGACAACATGGAGGAAGCCGGCTTCGACTTCTTCGCGAAGCCGGCTTCCCAAAAGGCGAAACTTGCATCCAATTACGATAGCGTTCCGCTAGGGTATGGATGCAAGAACATAGGGTTCAATGGCGACGTTGGTGAGGTGGAATACCTCCTTTTAAATGGAAGTGCTTCTCATATTTCTAAGATCTCCACAACCATCTCCAATGACCCATCAAACTTCAGGTATAGGGTGGTGAGTGCATACAGAGATGCAGTGGAGGAGTTAGCATGTGAGATATTGGAGCTGATGGCAGAGGGTTTGGGGGTCCCCAACACTTCCATCTTCACCACCTTCATCAACCACCCTGATAGCGACTCACTCCTCAGATTCAATCACTACCCCCCACTTCCACCTTCTCTTGCCTTTGGGGACCATTCTGACCCTCAGATCATAACCCTTCTCAGATCCAACCCTGTTTCTGGCCTCCAAATTTCCCTCCAACATGGTCTGTGGATCCCAGTCCTTCCTGACCCCAAAGCTTTCTCTGTTAACGTCGGTGATTTATTACAGGTTATGACAAATGGAAGATTTGTGAGTGTCCGGCACAGGGCGGTGACAAACTCAGAGAAGGCAAGAATGTCAATAGCATATTTTGGGGCTCCGCCACTGAATGCGTGTATCGTTGCTCCGCCGGAGATGCTTACACCAGAGAGGCCCTCCCTACTGTTTAGGGCATTCACTTGGGCTGAGTACAAGAAAGCCACCTACTCTCTTAGGCTTGGAGACACCCGCATTGACCTCTTTAGGAATTGA 960 0.4844 MVVASPNSIQTEKIVSINLPTKDLSKERATVAKLIVKASEEYGFFNVINHRIPQDIIDNMEEAGFDFFAKPASQKAKLASNYDSVPLGYGCKNIGFNGDVGEVEYLLLNGSASHISKISTTISNDPSNFRYRVVSAYRDAVEELACEILELMAEGLGVPNTSIFTTFINHPDSDSLLRFNHYPPLPPSLAFGDHSDPQIITLLRSNPVSGLQISLQHGLWIPVLPDPKAFSVNVGDLLQVMTNGRFVSVRHRAVTNSEKARMSIAYFGAPPLNACIVAPPEMLTPERPSLLFRAFTWAEYKKATYSLRLGDTRIDLFRN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00962 319 Pfam 2OG-Fe(II) oxygenase superfamily 174 268 IPR044861 -
Aip04g00962 319 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 318 - -
Aip04g00962 319 Pfam non-haem dioxygenase in morphine synthesis N-terminal 20 90 IPR026992 -
Aip04g00962 319 Coils Coil 134 154 - -
Aip04g00962 319 Gene3D - 3 308 IPR027443 -
Aip04g00962 319 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 172 270 IPR005123 -
Aip04g00962 319 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 318 - -
Aip04g00962 319 SUPERFAMILY Clavaminate synthase-like 16 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00962 Aip-Chr4 13291119 13303116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00962 10 318 Glycosyltransferase AT5G59530 27.844 2.23e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00962 K04125 - gmx:100811043 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00962 04 13291119 13303116 Aip04g00962 04 13291119 13303116 ECH