Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00957 ATGTTTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTCACAGCAAAGGATGATGTAGATAATCGTATTTACCCCGCAAAGGGATCATCATTGGAACGTGTGCTTACTGTTGTAATGTGTCATATTGGTCAGAAGCCATGTATCTGTTCATATTTTGATCCAAGATATGACTTCTCTTCGCAAATCCTTACAATTCCGTTCCTGTGGAATGCTTTTCCAGACTTAAGACAGGTTTATGCAACACAAGGCCTGAATCAACATTATGTTCATCAGATGGCAACTCTTGTTCCAGATCTAATCAATTTTCTACCTAAGGACATATCTGATGAAATTCCTACCTATGCCTGTCTGCTTGGAAATATATTAGAAACCGCGGGAATTGCTTTGTCACAACCTGACTGTTCGTTTGATATGGCCATGGACCTTGCAGCTATTGCTACATTTTTGCTTGAGTCACACCCATCGCTGAAACTGTTGAATAAGAAAGAAAATTCCGTGACTCGTGAGGATGACACTGGTGATGATGAAGTCATGGAAGTAGCTTTGGACAGGAAATTGGAGCAACAAATTTGCAATGCCATAGATACTCGCTTCCTTCTACAATTGACAAATATATTATTTAGAGATATTTCATCTGTCAATGGTTCAGATTATGGGCCAGATGATCGGGAGGTTGCAGCTGTTGGTGCTATTTGTGGATTTTTATACGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTTGCTTACAGAACCGAACTTGTTCCTATGTTATGGAAATTTATGAAGCAGTGTCATGAGAATAAACAACGGTTATCTTTGTCTGAGTGGTTATCTTACCTTTCTGGTGACGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAGGAGTTCTATGAGCAGGGGAAACCACTATCACTGGAGGACATTAGAAGCCTAATCATTCTGTTAAAACAGGTTCTGTGGCAGTTGTTGTGGGTGAATCATACATCATCTGCTACTCCAGTAAAATCTGTTCCAGTTACCACGGTTAGTAAAAGGCAATCTATTGAAGCCATTCAACAGAGGGTTAGCATTGTGGTCTCTGAGCTGCTCTCCCAGCTGCAAGATTGGAACAATCGTCGACAGTTTACTTCCCCCACTGACTTCCATGCTGATGGGGTGAATGACTCCTTCATCTCTCAGGCTTTGATGGAAAAGACACGAGCAAATGAAGTTTTAAAACAGGCTGCTTTGTTGATACCATTTACAAGCAGGGTTAAAATATTCACTTCTCAACTAGCTGATGTTCGGCAACAACATGGATCTCAGGCCTTATTTACTAGAAACAGATTCAGAATAAGACGAGATCATATCTTGGAGGATGCTTATAATCAAATGAGCCAGTTGTCAGAAGATGATCTTCAGGGATTGATTCGTGTGAGTTTTGTAAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCAGCTTTATCCCAATCCTGGATCAGGGATGATACATGAACAACATCTTCAATTTTTCCACTTTCTTGGTACACTCCTTGCAAAGGCAATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACTTTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCATCTTTGGACCCAGAATTGTATCGTCATCTTATATTTCTAAAGCATTATGAGGGTAACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAACAATGAATATGGAGAGCAAACTGAAGAGGAGCTCCTACCTGGTGGGAAAAACAAACGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCTAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAAGATTGGATTGATATGTTTAACGAGCAAGAACTGCAGCTTTTGATATCGGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGACTTCATACAAATTATGCAGGAGGCTATCATAGCGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGATTTTCCACGGAAAACAAGAAAAAGTTTTTGAAATTTGTGACAGGCTGCTCTCGCGGACCATTGCTTGGTTTCCGGTATCTTGAACCTTTGTTTTGCATACAAAGGGCTGGTGGTAATGCTATTGATGAAGCCCTAGATCGATTACCCACATCAGCTACTTGTATGAATCTGCTCAAGCTTCCGCCTTATACAAGTAAGGAGCAAATGGAAACCAAATTATTGTATGCTATAAATGCCGAAGCTGGATTTGATTTGAGTTAA 2472 0.3972 MFQNNAFGLLREIILTAKDDVDNRIYPAKGSSLERVLTVVMCHIGQKPCICSYFDPRYDFSSQILTIPFLWNAFPDLRQVYATQGLNQHYVHQMATLVPDLINFLPKDISDEIPTYACLLGNILETAGIALSQPDCSFDMAMDLAAIATFLLESHPSLKLLNKKENSVTREDDTGDDEVMEVALDRKLEQQICNAIDTRFLLQLTNILFRDISSVNGSDYGPDDREVAAVGAICGFLYVIFNTLPLERIMTVLAYRTELVPMLWKFMKQCHENKQRLSLSEWLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQGKPLSLEDIRSLIILLKQVLWQLLWVNHTSSATPVKSVPVTTVSKRQSIEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDSFISQALMEKTRANEVLKQAALLIPFTSRVKIFTSQLADVRQQHGSQALFTRNRFRIRRDHILEDAYNQMSQLSEDDLQGLIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHQLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGNISELELYFVIVNNEYGEQTEEELLPGGKNKRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEQELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSTENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNAIDEALDRLPTSATCMNLLKLPPYTSKEQMETKLLYAINAEAGFDLS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00957 823 Gene3D Hect, E3 ligase catalytic domains 463 701 - -
Aip04g00957 823 Gene3D Hect, E3 ligase catalytic domain 705 822 - -
Aip04g00957 823 CDD HECTc 461 821 IPR000569 GO:0004842
Aip04g00957 823 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 33 823 IPR044611 GO:0000209|GO:0061630
Aip04g00957 823 SMART hect_3 480 823 IPR000569 GO:0004842
Aip04g00957 823 Pfam HECT-domain (ubiquitin-transferase) 518 823 IPR000569 GO:0004842
Aip04g00957 823 Gene3D Hect, E3 ligase catalytic domain 587 666 - -
Aip04g00957 823 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL6 33 823 - -
Aip04g00957 823 ProSiteProfiles HECT domain profile. 482 823 IPR000569 GO:0004842
Aip04g00957 823 SUPERFAMILY Hect, E3 ligase catalytic domain 451 815 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00957 Aip-Chr4 13029852 13039882 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00957 K10589 - gmx:100787467 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00957 04 13029852 13039882 Aip04g00957 04 13029852 13039882 ECH