Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00956 ATGGTGAAGGTGCGGATGAACACTGCTGACGTGGCGGCGGAGGTTAAGTGCCTTCGTCGCTTGATCGGAATGCGTTGCTCCAATGTCTACGACCTCACTCCCAAGACGTATGTCTTCAAGCTGATGAACAGTAGCGGAGTTTCGGAATCCGGCGAAAGCGAAAAGGTCCTCCTTCTCATGGAAAGTGGCGTCAGATTGCACACCACTGTGTACATGCGTGATAAGAGCAATACTCCTTCTGGTTTTACTCTCAAATTGAGGAAGCATATTCGGACTAGGAGGCTTGAAGATGTTAGGCAGCTTGGCTATGATAGGATTATTCTCTTTCAATTTGGATTGGGGGAGAATGCAAACTATGTTATATTGGAACTCTATGCCCAGGGGAACATCCTCCTTACAGATGCTAACTTTACTGTCCTGACTCTCCTGCGATCTCATAGGGATGACGATAAGGGGCTTGCAATCATGTCACGTCATCGTTATCCCATAGAAAGCTGTCGAGTATTTGAGCGAACTACTGCCCAAAAGTTGCAGACAGCGCTAATGACCTCTAAGGAAGATGACAATGATGAGGCTGTTAAGGCCAATGGAAATGAAGCTGATATTGCTAATACAGGAAAAGAAAAGCATGGATTCCGTAAAGGCGGGAAGTCATCTGCCACATTGAAAAGTGTCCTTGGGGAGGCACTTGGTTATGGACCTGCCCTTTCTGAGCATATAATATTAGATGCTGGGTTAATCCCCAATACAAAAGCTCCCAAAGATAAAACATGGGATGATGCTACCGTTCAGGCTTTGGTCCAAGCTGTTGCAAAGTTTGAAGATTGGATGCTGGATGTTATTTCTGGTGAAATAGTTCCTGAAGGATACATTTTGATGCAGAAACAAAATTTGGGAAAGGATTCTTCCTCTCAAACAGGAAGTGTTAGCCAGATTTATGACGAGTTCTGCCCAATCTTACTCAACCAGTTTAAGTCAAGGGATTACACAAAATTTGAGACATTTGATGCTTCCTTGGATGAGTTCTACAGCAAAATTGAGAGCCAAAGGTCTGAACAACAGCAGAAAGCCAAAGAAAACTCAGCTGCTCAGAAGCTGAATAAAATACGCCAGGATCAGGAAAATCGAGTGCACACATTGAGGAAAGAAGCTGATCACTGTGTTAAAATGGCAGAATTGATAGAATACAACTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTTCACGTATGGTGAAAGATGAAAAGAAAGCTGGAAACCCTGTTGCTAGTCTCATTGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTACTGTTGGCAAACAATCTTGATGAAATGGATGATGATGAGAAGACACTCCCTGTAGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCTCATGCCAATGCTCGGAGGTGGTATGAACTGAAGAAAAAGCAAGAGAGCAAACAGGAAAAGACTATGACTGCGCATGAAAAGGCGTTTAAAGCTGCAGAGAAAAAGACTCGCCTACAGCTTAATCAGGAAAAAAGTGTTGCCACAATTTCACATATGCGAAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAACTATTTGATTATTAGTGGACGTGATGCCCAACAAAATGAGATGATAGTGAAGCGATATATGTCAAAAGGAGATCTCTATGTGCATGCCGATCTCCATGGTGCTTCCAGTACAGTTATCAAGAATCACAAGCCTGATCAACCAGTTCCACCTCTTACACTAAACCAAGCAGGATGTTTTACAGTATGCCATAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCGTGGTGGGTTTATCCACATCAGGTTAGTAAAACTGCTCCTACAGGGGAATATCTGACAGTTGGAAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGACTGCTATTTCGTTTGGATGAGAGTTCTTTGGGATCACATATAAATGAAAGGAGAGTAAGAGGAGAAGAGGAAGCAGTAGATGATAATGATGAAACTGGTCCAATTGAAGATCAATCTGATTCAGAGTCTGAGAAGGATGTTAGTGATACAAAATCTGCTGCAGACTTAGAAAGCAATGGTAGTTTGAGTGCAGATTCACAGAAGCCCTTACACGAAAGCTTTACTGCAGACACATCTCAGACAGGTTCGGCTACTATCAACGCTGAAACAACAGTTTCAAGTTATTTACCTCCAAAAGAGACAAGTAAGATGGCTTCGGGTGATGGGGGAAAAGTATCTGATACTAGTGGAAATGGCTTAGCATCTGTTAACCCTCAACTCGAGGAACTTCTTGATCGTGCTCTGGGACTTGGATCTGTTGCTAAATCAAGTAAAAACTATGGAGTTGAGAACCCTAATATTGATTTGGGCAGTGAGCATCATTTGGAAGAGAGCAAACCTTCAGTAAGGGATAAGCCTTATATATCAAAAGCAGAGAGAAGAAAAAGTAAAAAAGAACAGAAACATGGTGTGGCAGATGCAAATGTTGGACATGGAAAGGATGACCCAAAAGCAACTGATAGTTCTGCTAATCTACCTGCAAAAGAAGTTCAAAATTCAAAGGCAGGTGGTCAAAAAATCAGCCGTGGTCAGAAAGGAAAACTTAAGAAGATAAAGGAGAAGTATGCTGATCAAGATGAGGAAGAAAGGAGCATCCGAATGGCGTTATTAGCTTCCTCTGGAAAGTCAAACAAGAAGGAAGAGACATCAAGTGAAAAAGATGCACCAGACAAAGGGATAAAACCTGGAAATGGTCCTTCAGAAGCTCCAAAGATATGTTTCAAGTGTAAGAAGGCAGGTCACTTATCTCGGGATTGTAAGGAGCAACCGGATAGTCATTCAATTGGTGAAACCGAAGAAAATCTTAATAAGAGTGCTAGTAACCCTTCCCAAGCAGATAGGGTGGCAATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTAAATGATGTGGATTACTTGACTGGGAATCCACTCCCTAATGACATTCTCTTATACGCTGTTCCTGTCTGTGGTCCTTATAATGCAGTTCAGTCCTACAAATATAGAGTGAAGATAATTCCTGGATCCCTGAAGAAAGGAAAAGCTGCAAAAACTGCAATGAACCTGTTCAGCCACATGTCCGAAGCTACGAACCGGGAGAAGGAGTTGATGAAAGCCTGTACGGATCCCGAGTTGGTTGCCGCGTTTATAGGTAATGTGAAGATATCGGCAGCAGGCCTAACTCAGTTGAAGCAGAAGCAAAAGAAAGGCAAGAAGAGCAGCAAGAAGGAAAGTTAG 3393 0.4223 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDANFTVLTLLRSHRDDDKGLAIMSRHRYPIESCRVFERTTAQKLQTALMTSKEDDNDEAVKANGNEADIANTGKEKHGFRKGGKSSATLKSVLGEALGYGPALSEHIILDAGLIPNTKAPKDKTWDDATVQALVQAVAKFEDWMLDVISGEIVPEGYILMQKQNLGKDSSSQTGSVSQIYDEFCPILLNQFKSRDYTKFETFDASLDEFYSKIESQRSEQQQKAKENSAAQKLNKIRQDQENRVHTLRKEADHCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLSRMVKDEKKAGNPVASLIDKLHLERNCMTLLLANNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYELKKKQESKQEKTMTAHEKAFKAAEKKTRLQLNQEKSVATISHMRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKPDQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHINERRVRGEEEAVDDNDETGPIEDQSDSESEKDVSDTKSAADLESNGSLSADSQKPLHESFTADTSQTGSATINAETTVSSYLPPKETSKMASGDGGKVSDTSGNGLASVNPQLEELLDRALGLGSVAKSSKNYGVENPNIDLGSEHHLEESKPSVRDKPYISKAERRKSKKEQKHGVADANVGHGKDDPKATDSSANLPAKEVQNSKAGGQKISRGQKGKLKKIKEKYADQDEEERSIRMALLASSGKSNKKEETSSEKDAPDKGIKPGNGPSEAPKICFKCKKAGHLSRDCKEQPDSHSIGETEENLNKSASNPSQADRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGSLKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAFIGNVKISAAGLTQLKQKQKKGKKSSKKES 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00956 1130 MobiDBLite consensus disorder prediction 774 789 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 822 871 - -
Aip04g00956 1130 ProSiteProfiles Zinc finger CCHC-type profile. 959 974 IPR001878 GO:0003676|GO:0008270
Aip04g00956 1130 SMART c2hcfinal6 958 974 IPR001878 GO:0003676|GO:0008270
Aip04g00956 1130 Pfam Zinc knuckle 958 974 IPR001878 GO:0003676|GO:0008270
Aip04g00956 1130 Pfam NFACT protein C-terminal domain 1015 1108 IPR021846 -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 931 945 - -
Aip04g00956 1130 Pfam NFACT N-terminal and middle domains 218 533 - -
Aip04g00956 1130 Pfam NFACT N-terminal and middle domains 10 161 - -
Aip04g00956 1130 Pfam NFACT protein RNA binding domain 540 651 IPR008532 -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 719 766 - -
Aip04g00956 1130 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 182 216 - -
Aip04g00956 1130 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1118 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 704 718 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 682 791 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 970 984 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 903 919 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 970 1003 - -
Aip04g00956 1130 PANTHER - 3 1118 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 877 892 - -
Aip04g00956 1130 Coils Coil 356 383 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 350 370 - -
Aip04g00956 1130 MobiDBLite consensus disorder prediction 809 957 - -
Aip04g00956 1130 SUPERFAMILY Retrovirus zinc finger-like domains 943 977 IPR036875 GO:0003676|GO:0008270
Aip04g00956 1130 Gene3D - 953 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00956 Aip-Chr4 12998938 13006591 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00956 K24971 - gmx:100807437 1847.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00956 04 12998938 13006591 Aip04g00956 04 12998938 13006591 ECH