Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00955 ATGGCGTCTCTGGCTCAGCAGCTGAGCGCCCTCAGATGGTCTCCACTGCCGTCCACGTCTTCGTCAAGACCAACCACCGCCCACAACCGCCGCACCCGCACGCTCCTTCCGGTGGTGTGTTCGGTGGCCTTATCGAATGCGCAGAACCGAGAGAGAGTGAAGCTCAAAGAGCTCTTCGAGCAAGCCTATGAGAGGTGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACCGTTGATCAGTTCACTGAAGCTCTTGAAAAGTATGATTTTGATTCCGAGGTTGGCACCAAGATTAAGGGCACAGTATTTGCTGTAGATGCAAGTGGAGCTTATGTTGACGTTACTGCAAAGTCGACTGCATATTTGCCACTGCAAGAAGCATGCATCCACCGAATTAAGCATGTGCAAGCAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTGTAGTCATTGGGGAAAATGAAGTTGATGATGGCCTGATCTTGAGTTTAAAGGCTATTGAGTTCGACCTTGCATGGGAACGCTGTAGGCAACTTCAAGCAGAAGATGCAGTTGTCAAGGGTAAGATTGTCAATGGAAACAAGGGTGGATTGGTGGCCGAGGTGGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATTTCATCGAAATTATCTGGAGAAGAGCTACTTGAGAAGGAACTCCCTCTAAAGTTCATGGAGGTGGATGAGGAACAGTCCAGACTTATCCTCAGTCACCGTAAAGCCGCTGCTGACAGCCAGGGACAGCTGGGAATTGGATCAGTAGTAACTGGCACTGTTCAAAGCCTAAAGCCATATGGTGCCTTCGTTGACATTGGTGGAATCAGTGGTCTCCTTCACGTCAGTCAGATCAGTCATGATCGTATAACTGATATTGCAAGTGTTCTTCAACCCGGTGATATTCTGAAGGTGATGATACTAAGTCATGATCGGGAGAGAGGCCGAGTAAGCCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGATATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAAGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCCATGGCTCGAGCTGATATGCTTCGGTTCCAGCCAGAGAGTGGATTAACTCTTAGCAATGAAGGGATTTTAGGACCACTTTCTTCAGAGTTGCCTGCAGAGGGAGTGGATTTCAATGAGGTACCCCCAGCTGAAGAAGATTCATGA 1236 0.4887 MASLAQQLSALRWSPLPSTSSSRPTTAHNRRTRTLLPVVCSVALSNAQNRERVKLKELFEQAYERCRTAPMEGVSFTVDQFTEALEKYDFDSEVGTKIKGTVFAVDASGAYVDVTAKSTAYLPLQEACIHRIKHVQAAGIVPGLREEFVVIGENEVDDGLILSLKAIEFDLAWERCRQLQAEDAVVKGKIVNGNKGGLVAEVEGLKGFVPFSQISSKLSGEELLEKELPLKFMEVDEEQSRLILSHRKAAADSQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRITDIASVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSNEGILGPLSSELPAEGVDFNEVPPAEEDS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00955 411 PANTHER 30S RIBOSOMAL PROTEIN S1 1 409 - -
Aip04g00955 411 Gene3D - 176 254 IPR012340 -
Aip04g00955 411 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Aip04g00955 411 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
Aip04g00955 411 SMART S1_6 258 328 IPR022967 -
Aip04g00955 411 SMART S1_6 93 165 IPR022967 -
Aip04g00955 411 SMART S1_6 181 247 IPR022967 -
Aip04g00955 411 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Aip04g00955 411 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Aip04g00955 411 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Aip04g00955 411 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Aip04g00955 411 MobiDBLite consensus disorder prediction 382 411 - -
Aip04g00955 411 Gene3D - 77 175 IPR012340 -
Aip04g00955 411 SUPERFAMILY Nucleic acid-binding proteins 85 190 IPR012340 -
Aip04g00955 411 CDD S1_RPS1_repeat_hs4 260 328 - -
Aip04g00955 411 Gene3D - 255 332 IPR012340 -
Aip04g00955 411 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Aip04g00955 411 Coils Coil 345 365 - -
Aip04g00955 411 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Aip04g00955 411 CDD S1_RPS1_repeat_ec2_hs2 183 247 - -
Aip04g00955 411 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 409 - -
Aip04g00955 411 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Aip04g00955 411 Pfam S1 RNA binding domain 181 247 IPR003029 GO:0003676
Aip04g00955 411 SUPERFAMILY Nucleic acid-binding proteins 182 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00955 Aip-Chr4 12993713 12997127 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00955 K02945 - gmx:100806905 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00955 04 12993713 12997127 Aip04g00955 04 12993713 12997127 ECH