Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00352 ATGGCGAGGTCAGATGAAGAATACGATTACCTATTCAAGGTGGTACTGATCGGTGATTCTGGAGTGGGAAAATCCAATCTGCTTTCTCGTTTCACACGCAACGAGTTCTGTTTAGAGTCGAAATCCACAATCGGCGTGGAATTCGCGACTCGCACCCTTGAGGTTGAAGGAAGAACGGTTAAGGCTCAGATATGGGACACAGCTGGACAAGAACGATACAGAGCAATAACCAGTGCGTATTATCGTGGCGCTCTTGGAGCTCTTCTTGTCTACGATGTAACCAAACCGACAACCTTCGACAATGTTGGGCGATGGCTCAAGGAGCTCAGAGACCACGCCGATGCTAACATAGTCACCACCTTGATCGGCAACAAAACTGATCTCAAGCATCTCAGAGCTGTTGCATCCGAGGATGCACGAACATATGCCGAGAAAGAAGGCCTTTCTTTCGTTGAGACCTCTGCTCTTGAGTCCATCAATGTCGAGAAGGCTTTCCACACCATTCTTGCTGAGATATACCGCATAATCAGCAAGAAATCATTGTCTTCTTCGGCTGACGCCGCTGCTGCTGCTACTGCTCTTAAAGAAGGCAAGACCATCACCGTCGCTGCACCCCACCCCAATGCTAAAGATGGGAAGCCTTGTTGCTCATCTTGA 657 0.4886 MARSDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLEVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFDNVGRWLKELRDHADANIVTTLIGNKTDLKHLRAVASEDARTYAEKEGLSFVETSALESINVEKAFHTILAEIYRIISKKSLSSSADAAAAATALKEGKTITVAAPHPNAKDGKPCCSS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00352 218 PANTHER - 3 218 - -
Aip04g00352 218 Gene3D - 4 216 IPR027417 -
Aip04g00352 218 PRINTS Transforming protein P21 ras signature 12 33 - -
Aip04g00352 218 PRINTS Transforming protein P21 ras signature 35 51 - -
Aip04g00352 218 PRINTS Transforming protein P21 ras signature 53 75 - -
Aip04g00352 218 PRINTS Transforming protein P21 ras signature 115 128 - -
Aip04g00352 218 PRINTS Transforming protein P21 ras signature 150 172 - -
Aip04g00352 218 SMART ras_sub_4 9 175 - -
Aip04g00352 218 ProSiteProfiles small GTPase Rho family profile. 5 173 - -
Aip04g00352 218 SMART rab_sub_5 12 175 - -
Aip04g00352 218 ProSiteProfiles small GTPase Ras family profile. 6 203 IPR001806 GO:0003924|GO:0005525
Aip04g00352 218 SMART rho_sub_3 14 174 IPR001806 GO:0003924|GO:0005525
Aip04g00352 218 TIGRFAM small_GTP: small GTP-binding protein domain 10 168 IPR005225 GO:0005525
Aip04g00352 218 CDD Rab11_like 9 173 - -
Aip04g00352 218 Pfam Ras family 13 173 IPR001806 GO:0003924|GO:0005525
Aip04g00352 218 PANTHER RAS-RELATED PROTEIN RABA2A 3 218 - -
Aip04g00352 218 SMART ran_sub_2 17 214 - -
Aip04g00352 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 180 IPR027417 -
Aip04g00352 218 ProSiteProfiles small GTPase Rab1 family profile. 7 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00352 Aip-Chr4 4279880 4280908 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00352 K07904 - dcr:108204879 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00352 04 4279880 4280908 Aip04g00352 04 4279880 4280908 ECH