Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00309 ATGGATTTCTTGGAACTGGAGGCAGTGGAAGGCTTGAGGTGGTCATGGAACTCATGGCCAACCTCGAAATCCGAAGTTTCGTCTCTCATAATCCCCCTCTCCATCATGTGCACCCCTCTCATGCAACCCCCCGAGCTTCCCATCGTACCCTGCGACCCTCTCAACTGCTCTCGATGCGACGCCGTTTTGAATCCCTACGCCCGTCTCGACTACCAGTCTCGCATCTGGCACTGCCCTTTCTGCTCCCAACGCAACCCCTTCCCTCGCTCCTACTCCGACATCGCCGATACCAATCTCCCCGCCAAGCTCTTCCCTACCTATAGCTCCGTCGAATACGCCCCCGCTCACGTGCCTTCTAGTTCTAACTCCCTCCTCTCACGTGCGCCTATTACTTCTCCTCCTTCTTCTTCTTCTCTTCCTCCTCGCGTGCTGTCTTCGTCTTTCTCTTCTTCGTCTTCGCTGGTTAGTGTCGCCGCTGCTGCTGCTGATCCGCGTGGGCCTGGGCTTGGGCCTGGGCCTGCTTTGGTGTTTGTTGTGGATCTCTCCTCTGCGGAGGACGAGTTGCGTGCGCTTAAGAAGGAGCTGCTGCTGGTCATGGAACAGTTGCCGGAGAACACCCTTGTTGGATTAGTTACCTTTGACTCCATGGTTTATGTTCACGATCTTGGCTATTCTGAGTGCTCAAAAGTTATCCTATTCCATGGCGATCGTGAAGTTTCGTCTAATCAGACCAGACAGTTCCTCAACATTAGTCACGCCCACCACCAGCTGCATCATGGACAAACGCCTGTTGTCCCAAAGCAGGGATATTTGTTGCCAATTTCAGAATGCGAGTTCAGCATCACCGCGGCAATTGAAGAGATCCATTGTATGTGGAAGTACACTTCAGGAAGGCGTCCTCTAAGGTCCACGGGTGCTGCAATATCAGCTGCACTTGGAGTTTTAGAGTCTTGCCAAATAAATACTGGGTCGAGGATCATGGTCTTCACATCTGGACCTGCTACACTAGGACCAGGTGTGGTTGTGGACTCGGATCTCGCCCAAGCCATGAGAACCCACCAGCACATCATGAATGGGCATGCAAGACACCATGAGAAGTCTTGTAGTTTCTACAAACGAGTTTCCAAGAGGCTCTGTGATGCATCTGTTGTTCTTGATCTGTTTGCTTGTTCTCTTGACCAAGTTGGAGCGGCTGAGCTTCGAGAACCTGTTGAGCGCTCAGGTGGGTTTATGATTCTTGCTGAGTCTTTCGAATCAGATCAATTCAGGAAATGTTTGAGGCATCTATTTGAACGTGATGATGGTGGCTATTTGAAGATGAACTTCGATGCTACCATTGAAGTAGTGACAACGAAAGATGTGAAAATCTGTGGAGCACTTGGTCCTTGTGTGTCTCTTCGAAAAAAGAATAGTTTAGTAAGTGAGAGTGAGGTTGGAGAAGGGGGTACCTGTATGTGGAAGTTAAATACTCTGACCGACAAGACTTGTATTGCTTTTTTCTTTCAAGTAAGCAACGAACAGAAAATCCAGCCTGGTTCTGCATTTTTAATTCAGTTTATCACACGATACAGACAAGGGAACTTGGGAATCCGGAAGAGGGTGACCACAGCTGCAAGACGATGGGTTGGGAATTATTCAACCGATATTGCTGCAGGGTTTGATCAAGAAGCCGCAGCTTCGGTTATGGCAAGACTTGCTATTCTCCGGGCAGAGACATGCTATGCCCGTGATGTGATTAGATGGCTGGATGACACACTTATCCGTTTTGCTTCCAAGTTTGGGGATTATGTGCCGGAAGATCCTTCTACATTCCGGCTTTCTTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTAAGGCGATCTCAATTTATTGATGTCTGTAACACTACACCTGATGAAACTGCTTTTTTCCGACTAATGCTAAATCGCGAAGGAGTAGTGGGCTCTCTTATAATGATTCAACCTACGCTTTTCCAATATTCATTTGATGGGCCCCCTGTGCCAGTACTTCTAGACATTCGTTCCATTTATCCAGATGTTATCTTGCTCTTTGATTCCTACTTCCATGTGGTGATTCATTATGGGTCCAAGATTACTCAGTGGAGAAAGCTTGGTTATGATAGGGATCCGAATCATGAGAACTTCAGAAAGCTGTTGGAAGCCCCAGAATTGGATGCACAGCAATTGGTGATGGAACGGGTGCCAGTGCCAAAGTTTATAAGATGTGACCAGCATAGCAGTCAGGCAAGGTTTCTTCTTGCCAAGTTGAATCCATCCGTAACTCAAAATTCAACATACACAGATGGTTCGGACGTCGTCTTTACAGATGACTTGAGCTTGCAAGTATTTTTAGATCACTTGCAGGTCTTGGCGGTGCAAGGGTAA 2391 0.4785 MDFLELEAVEGLRWSWNSWPTSKSEVSSLIIPLSIMCTPLMQPPELPIVPCDPLNCSRCDAVLNPYARLDYQSRIWHCPFCSQRNPFPRSYSDIADTNLPAKLFPTYSSVEYAPAHVPSSSNSLLSRAPITSPPSSSSLPPRVLSSSFSSSSSLVSVAAAAADPRGPGLGPGPALVFVVDLSSAEDELRALKKELLLVMEQLPENTLVGLVTFDSMVYVHDLGYSECSKVILFHGDREVSSNQTRQFLNISHAHHQLHHGQTPVVPKQGYLLPISECEFSITAAIEEIHCMWKYTSGRRPLRSTGAAISAALGVLESCQINTGSRIMVFTSGPATLGPGVVVDSDLAQAMRTHQHIMNGHARHHEKSCSFYKRVSKRLCDASVVLDLFACSLDQVGAAELREPVERSGGFMILAESFESDQFRKCLRHLFERDDGGYLKMNFDATIEVVTTKDVKICGALGPCVSLRKKNSLVSESEVGEGGTCMWKLNTLTDKTCIAFFFQVSNEQKIQPGSAFLIQFITRYRQGNLGIRKRVTTAARRWVGNYSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDTLIRFASKFGDYVPEDPSTFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSIYPDVILLFDSYFHVVIHYGSKITQWRKLGYDRDPNHENFRKLLEAPELDAQQLVMERVPVPKFIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDVVFTDDLSLQVFLDHLQVLAVQG 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00309 796 Gene3D - 51 108 - -
Aip04g00309 796 SUPERFAMILY Zn-finger domain of Sec23/24 44 113 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip04g00309 796 Pfam Sec23/Sec24 zinc finger 53 91 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip04g00309 796 Pfam Sec23/Sec24 helical domain 554 650 IPR006900 GO:0006886|GO:0006888|GO:0030127
Aip04g00309 796 Pfam Sec23/Sec24 beta-sandwich domain 442 542 IPR012990 -
Aip04g00309 796 Gene3D - 435 542 - -
Aip04g00309 796 Gene3D Severin 656 760 IPR029006 -
Aip04g00309 796 Gene3D von Willebrand factor, type A domain 173 434 IPR036465 -
Aip04g00309 796 MobiDBLite consensus disorder prediction 120 142 - -
Aip04g00309 796 SUPERFAMILY vWA-like 173 432 IPR036465 -
Aip04g00309 796 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 796 IPR037364 -
Aip04g00309 796 Pfam Gelsolin repeat 668 754 IPR007123 -
Aip04g00309 796 Gene3D Sec23/Sec24 helical domain 551 793 - -
Aip04g00309 796 SUPERFAMILY Helical domain of Sec23/24 554 656 IPR036175 GO:0006886|GO:0006888|GO:0030127
Aip04g00309 796 CDD Sec23_C 646 766 IPR037550 GO:0030127|GO:0090114
Aip04g00309 796 SUPERFAMILY beta-sandwich domain of Sec23/24 2 553 - -
Aip04g00309 796 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 657 795 IPR036180 -
Aip04g00309 796 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 796 - -
Aip04g00309 796 Coils Coil 181 201 - -
Aip04g00309 796 Pfam Sec23/Sec24 trunk domain 173 431 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00309 Aip-Chr4 3967731 3970932 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00309 K14006 - qsu:112032200 1180.24