Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00293 ATGAGTATGTCATTTTCCTTGGCACCAAAGCCTTATTCTTCCTCCATCACTTGTTGTAGGAGATTTGGTGGTATAAGGTCAGAAGTTGTGGCAGTTATGGTGGCTCCAAAACAAAGAAGAAGAGAATTATTAGGAGAAAGTAGTGGTACGGTAATAATGTTTCCTCATCATTTGTCAAAACAGGGTGTTCCTCTTGCTGATTTGCATGTGCACGAGGTTGTTGAGTGGCAGTGTCAAAATGGTAATTTTGGCACCACTACTAAGCCGCGGTTTGAGCCTTGTTTTCTCAACGATGGATATGAAATGTGTAGGAAGATTTGTAAGGAATATGCTAAGACCTTCTATCTAGGAACTTTGCTTATGACACAAGAAAGACAAAAAGCTATATGGGCGATTTATGTTTGGTGCAGGAGGACGGATGAATTGGTTGATGGACCGAATGCAGATTACATGAAGAGCTGTGGTGTTCTTGATAGGTGGGAAGAGAGATTGCATGATATTTTCAATGGAAGACCCTATGATTTGCTTGATGCTGCTCTCACTGATACAATCTCCAACTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACAAAGAAAACAAGATACAAAAACTTCCAAGAATTATATCTGTACTGCTACTATGTGGCTGGAACTGTTGGATTAATGAGTGTTCCAATAATGGGTATTGCACCCGAATCTATCATCCCTCCTCAAAGTGTATATGATTCAGCACTCTCTCTTGGGATTGGAAATCAATTAACAAACATTCTTAGGGATGTGGGTGAAGATGCAACAAGAGGTAGAGTGTACCTTCCACAAGATGAATTGGCGCAGTTTGGATTGTGTGAAGAAGATATATTCGCAAGAAAGGTAAGTGAAAGTTGGAGAGAGTTCATGAAAGAGCAGATTATGAGAGCAAGATTCTACTTCAATTTGTCCGAACAAGGAGCTTCTCAGCTTCATAAGGCTAGCCGTTGGCCGGTTTGGTCCTCATTAATATTATACCGTAAGATCTTGGATGCAATTGAAGACAACGATTACGACAATCTGACGAAACGAGCTTACGTTGGACGAACCAAGAAGTTTCTGATGTTGCCTCTTGCTTACAAACGATCTCTCTCAAGTCCCAACACCAATTTGATCCCTCGTTACCAACGCTAA 1185 0.4076 MSMSFSLAPKPYSSSITCCRRFGGIRSEVVAVMVAPKQRRRELLGESSGTVIMFPHHLSKQGVPLADLHVHEVVEWQCQNGNFGTTTKPRFEPCFLNDGYEMCRKICKEYAKTFYLGTLLMTQERQKAIWAIYVWCRRTDELVDGPNADYMKSCGVLDRWEERLHDIFNGRPYDLLDAALTDTISNFPLDIKPFRDMIEGMRMDTKKTRYKNFQELYLYCYYVAGTVGLMSVPIMGIAPESIIPPQSVYDSALSLGIGNQLTNILRDVGEDATRGRVYLPQDELAQFGLCEEDIFARKVSESWREFMKEQIMRARFYFNLSEQGASQLHKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKFLMLPLAYKRSLSSPNTNLIPRYQR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00293 394 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 51 386 - -
Aip04g00293 394 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 51 386 - -
Aip04g00293 394 CDD Trans_IPPS_HH 101 369 IPR033904 GO:0004311
Aip04g00293 394 ProSitePatterns Squalene and phytoene synthases signature 1. 219 234 IPR019845 GO:0016765
Aip04g00293 394 SFLD Phytoene synthase like 98 379 IPR044843 GO:0004311
Aip04g00293 394 Gene3D Farnesyl Diphosphate Synthase 95 377 IPR008949 -
Aip04g00293 394 SFLD Isoprenoid Synthase Type I 98 379 - -
Aip04g00293 394 Pfam Squalene/phytoene synthase 109 366 IPR002060 GO:0009058
Aip04g00293 394 ProSitePatterns Squalene and phytoene synthases signature 2. 255 280 IPR019845 GO:0016765
Aip04g00293 394 SUPERFAMILY Terpenoid synthases 99 381 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00293 Aip-Chr4 3715193 3721421 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00293 K02291 - gmx:100782394 545.428