Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00287 atgggagaaagcgaaggcgcaccggacgaggtgaggacggtgtcgagaagaaggcacacaccggctgcgacggaggtgctggacgtccgggttgTTGTGGTGCCGTTAGTTCGACCCAAACAATATGCGCGTCCTCCCTTGGCGGTGGCCTGTGCGGCAACGGCGCCAGTCAGAACAGTGTCAGCACGATTTCCGATGGCGGCTGGTGACCGTGGCAAAAACACGAAAGCGTTGAACATCAGTCGGCGGCGTCTTCCCTTCCCCTATTCAAACCCTAAACCTAACCCTATTTTCTTCACTTTTCACCGCTCTGCTGCTATTCTGCAAGAGATGAGAGGAAGGAGTTACAGCCCGTCACCACCGCCGGCAAGGGGTTACAGCCGAAGAGGAAGGAGTCCGAGCCCAAGAGGCCGCTACTCTAGCCGCTCTAGAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCATGATTGTAGGCCTGAGGACCTTCGCAGACCTTTTGGTCAGTTTGGTGCCCTTAAGGACATTTACTTGCCCAAGGATTATTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTATGTGGATCCTGCTGATGCGGCAGATGCCAAATATCATATGGATGGTCAAGTTCTACTTGGTCGGGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAAGTGAGATGAGAACAAGGGAGAGAAGGGGCCGATATGATCGAAGAAGATCTCCTCCTCGTTATTCTCGATCACCCCGCTACTCTCGATCCCCACCACCACGTCATAGGTCTCGTTCCCATAGTCGTGACTATTATTCCCCTCCTCCTAAAAGAAGGGAATATTCAAGATCTCCCTCGCCTGAAGGTAGAAGGTACAGTCGAGAAAGATCATATTCACATCATAGTAGAGAGAGGTCATCCTCGCGTTCTCCACCCTATAACGGTGGCTCAAGGAGCCGAAGTCAGAGTCCGGCAAAGGGCCCAACCCATAGCAGAAGTCCAACCCCAGACCGTGATGTTAGGGAACTGGCAGCGCGCAGGTCCCCAGCCAGTGAGAACGTCAACACCAGAAGTGAGATATCTAGTAACAGTAAAGAAGATATTTGTGTTGATGATGAAGCCAGTGATGGTAGTGATGTTAGGGTTGAAGGTGACCATGTTGAGGAGAAAGAGTTGCCAACAGTTTATGATTTGCTTGTCTGCAAGATTGGGCTGATCTTGCTGACTACAGTAATACTGGATGGGATGAAGCTTAAAAAATGGCTAGAATCTGTTTTATTGCTGCTTGTCGCCATGTTAAGCGGTGCATTAGGTGCATTTGTGGGGGTAAACATTGGCACTGATGTATCTGATCTTCCATCTGCTGCAAATGTAGTAGCCATTCTGAAAGCGCATCAAATTGGCCATGTGCGACTATACGATGCCAATGCACACATGCTACAAGCCCTTTCAAACACAGGAATTGAAGTGATTGTTGGTGTCACCAATGAGGAGTTACTTAGGATTGGTAGATCTCCATCGGTCGCAGCGGCCTGGGTTAACAAGAATGTAGCTGCTTACATGCCATCTACTAATATCACAGCAATAGCAGTTGGCAGTCAGGTTCTTACCATAATTCCAAAGATTGCCCCTGTTCTTGTTCCTGCCATGAATTATCTTCACAAAGCTCTTATTGCTGCAAACCTTAACTTTCGTGTCAAAGTTTCGACTCCCCAATCCATGGATATTATCCCTCGGCCATTCCCACCTTCTACAGCTGCATTTAACTCTTCATGGAACTCTACAATCTATCAACTCCTTCAGTTTCTAAGGAACACAAATTCCTCTTACATGTTAAATGCCTACCCTTATTATGGATACACTAAAGGGGATGGCATTTTCCCTATCGAATATGCTCTTTTCCGGTCGCTCCCTTCAGTGAAACAAATTGTTGATCCAAATACACTTTTCCATTATAATAGTATGTTTGATGCCATGGTGGATGCTACTTATTATTCAATAGGTGCCTTCAATTTCGATAATATTCCCATTATTGTCACAGAGACTGGTTGGCCTAGTTTTGGTGGAGCAGATGAACCGGATGCTACCTCAGAGAATGCTGAGAGTTACAATACTAATTTGATTCGGCGAGTTCTCAATGATTCAGGTCCCCCTAGTCAGCCAAAGATAGCCATTAACACTTACATATATGAACTGTTTAATGAAGACAAGAGGAATGGACCGACATCGGAGAAGAATTGGGGTGTTTTTTATACTAATGGAAGTACTGTTTATCCTTTGAGTTTTAGTGGTTCTGTTCAGAATACTGGAAATTCTTCAGCAGTTTTCTGTGTTGCCAAAGATGGTGCAGACACTGATAAACTGCAAGCTGCTCTGAACTGGGCTTGTGGACAAGGCCAAGCTAATTGCGCAGCGATTCAAGCAGGGCGGCCATGCTATCTCCCCAATAACTTGAAAAGCCATGCCTCTTATGCTTACAATGATTATTATCAGAAAATGCATAATGCTGGGGGAACTTGTGATTTTGATGGAACAGCTATGGTTACTTATGAGGATCCTAGTTATGGATCCTGTGTATATGCAGGAAGTTCCAACTCGTCAGGCGGCGCCGGACGGAGTTCATCATCTACAGCAGCAATTGCACCTATGGGTTCTTTTGGAGCAAGCTCAAACCTTCAAGTTCCCATCCTTCAGTCTTTGATATCTGTTATTAGTGTTATTTTTGCCCTAGTGTCATTATGA 2754 0.4423 MGESEGAPDEVRTVSRRRHTPAATEVLDVRVVVVPLVRPKQYARPPLAVACAATAPVRTVSARFPMAAGDRGKNTKALNISRRRLPFPYSNPKPNPIFFTFHRSAAILQEMRGRSYSPSPPPARGYSRRGRSPSPRGRYSSRSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPSEMRTRERRGRYDRRRSPPRYSRSPRYSRSPPPRHRSRSHSRDYYSPPPKRREYSRSPSPEGRRYSRERSYSHHSRERSSSRSPPYNGGSRSRSQSPAKGPTHSRSPTPDRDVRELAARRSPASENVNTRSEISSNSKEDICVDDEASDGSDVRVEGDHVEEKELPTVYDLLVCKIGLILLTTVILDGMKLKKWLESVLLLLVAMLSGALGAFVGVNIGTDVSDLPSAANVVAILKAHQIGHVRLYDANAHMLQALSNTGIEVIVGVTNEELLRIGRSPSVAAAWVNKNVAAYMPSTNITAIAVGSQVLTIIPKIAPVLVPAMNYLHKALIAANLNFRVKVSTPQSMDIIPRPFPPSTAAFNSSWNSTIYQLLQFLRNTNSSYMLNAYPYYGYTKGDGIFPIEYALFRSLPSVKQIVDPNTLFHYNSMFDAMVDATYYSIGAFNFDNIPIIVTETGWPSFGGADEPDATSENAESYNTNLIRRVLNDSGPPSQPKIAINTYIYELFNEDKRNGPTSEKNWGVFYTNGSTVYPLSFSGSVQNTGNSSAVFCVAKDGADTDKLQAALNWACGQGQANCAAIQAGRPCYLPNNLKSHASYAYNDYYQKMHNAGGTCDFDGTAMVTYEDPSYGSCVYAGSSNSSGGAGRSSSSTAAIAPMGSFGASSNLQVPILQSLISVISVIFALVSL 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00287 917 SUPERFAMILY (Trans)glycosidases 445 766 IPR017853 -
Aip04g00287 917 Gene3D - 775 871 - -
Aip04g00287 917 MobiDBLite consensus disorder prediction 228 251 - -
Aip04g00287 917 SMART rrm1_1 149 222 IPR000504 GO:0003723
Aip04g00287 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Aip04g00287 917 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 421 876 - -
Aip04g00287 917 MobiDBLite consensus disorder prediction 312 334 - -
Aip04g00287 917 Gene3D Glycosidases 444 773 - -
Aip04g00287 917 MobiDBLite consensus disorder prediction 112 146 - -
Aip04g00287 917 ProSitePatterns Glycosyl hydrolases family 17 signature. 679 692 IPR000490 GO:0004553|GO:0005975
Aip04g00287 917 Pfam X8 domain 780 851 IPR012946 -
Aip04g00287 917 MobiDBLite consensus disorder prediction 368 389 - -
Aip04g00287 917 MobiDBLite consensus disorder prediction 336 350 - -
Aip04g00287 917 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 421 876 IPR044965 GO:0004553|GO:0005975
Aip04g00287 917 SMART X8_cls 779 864 IPR012946 -
Aip04g00287 917 Gene3D - 139 255 IPR012677 -
Aip04g00287 917 SUPERFAMILY RNA-binding domain, RBD 148 252 IPR035979 GO:0003676
Aip04g00287 917 MobiDBLite consensus disorder prediction 353 367 - -
Aip04g00287 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 219 IPR000504 GO:0003723
Aip04g00287 917 MobiDBLite consensus disorder prediction 228 389 - -
Aip04g00287 917 Pfam Glycosyl hydrolases family 17 445 766 IPR000490 GO:0004553|GO:0005975
Aip04g00287 917 MobiDBLite consensus disorder prediction 268 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00287 Aip-Chr4 3598638 3609711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00287 420 898 Glycoside Hydrolase AT3G13560 64.792 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00287 K19892 - gmx:100802135 782.326