Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00220 ATGTACTCCAAGTTCTCCCTCCCTCTCTACGCCCGCGCCGTTTTTGATTCCATCTCGTCGTTTAATAAGGCCTCTTGGACCGCCATGATATCGGGCTATGCACGTAACGGTTTCAAGAACGAAGCTTTGAGGCTATTTCGAGAAGCTCCCAATAGGGACTTGTTTGCTTGGACAGCTTTGATTTCGGGGTTTGTTCAGAGTGGGAACGGTGTTGATGCATTGCACCTGTTTGTGAAAATGCTTCGTGAAGGGGTTGAGATTTTGGACCCTTTGGTGCTCTCTAGTGTGGTTGGGGCTTGTGCTAATTGTGCTCTTTGGGAGCTTGGGAAGCAAGTGCATTGTTTGGTGATAGGTCTTGGCTTTGAGTCTTGTGTGTTTGTGAGCAATGCGCTTGTGGATATGTATGCCAAGTGTAGCGACCTTGATGCGGCCAAGGGTGTGTTCTTTGGGATGTGGAGGAAGGATGTGGTTTCTTGGACTTCTATTATTGTCGGCAGTGCGCAGCATGGAAGAGCTGAGGAAGCATTGGCTCTGTATGACAGCATGGTTTCGGCTGGTGTTAAGCCGAATGAGGTGACATTTGTTGGATTGATTTATGCCTGTAGTCACGCTGGTTTGGTTGGCAAAGGCCGCAAATTGTTCAGGTCTATGGTTGAGGATCACGGAATTAGGCCTTCGCTGCAGCATTATACATGTTTGCTTGATCTTTTGAGTCGATCAGGTCACCTTGAAGAGGCTGAGAATCTTGTACGGGCGATGCCAATTACCCCTGATGAACCTACTTGGGCTGCTTTACTGAGTGCTTGTAAGCACCATGGTAATGCCAAGATGGCGATTAGGATTGCGGATCATCTATTGAGCTTAAAACCTGAAGAGCCTTCCTCCTATATATTGTTATCTAATGTTTATGCTGGGGCTGGTATGTGGGAAAATGTTTCAAAGGTGAGGAAGATGATGATGGTAATGGAAGTTAAGAAACAACCTGGGTATAGCTGCATTGAATTGGGAAAGGAGAGCTATGTGTTTTATGCTGGAGAGACGTCTCATCCGATGAAGGATGAGATTGCAGCTTTGATGAGGAAGTTGGATGAAGAGATGAGGAAAAGGGGTTATGTTCCTGATACTAGCCCAGTTTTGCATGACATGGATCAGCAGGAGAAGGAAAGACAGCTTTTCTGGCATAGCGAGAGGCTGGCTCTAGCTTACGGGCTTCTCAAGTCTGTTCCGGGAACTATTATCCGTATAGTTAAAAATCTTCGCGTCTGTGGAGATTGTCATACTGTTCTGAAGCTCATCAGCACCATAACAAGCAGAGACATTTATGTTCGTGATACTACAAGGGACCATGCTATTAAGAATTACTTGTGGGTCTTGATTGCAGTTGCTGCAGAATTGTGA 1398 0.4607 MYSKFSLPLYARAVFDSISSFNKASWTAMISGYARNGFKNEALRLFREAPNRDLFAWTALISGFVQSGNGVDALHLFVKMLREGVEILDPLVLSSVVGACANCALWELGKQVHCLVIGLGFESCVFVSNALVDMYAKCSDLDAAKGVFFGMWRKDVVSWTSIIVGSAQHGRAEEALALYDSMVSAGVKPNEVTFVGLIYACSHAGLVGKGRKLFRSMVEDHGIRPSLQHYTCLLDLLSRSGHLEEAENLVRAMPITPDEPTWAALLSACKHHGNAKMAIRIADHLLSLKPEEPSSYILLSNVYAGAGMWENVSKVRKMMMVMEVKKQPGYSCIELGKESYVFYAGETSHPMKDEIAALMRKLDEEMRKRGYVPDTSPVLHDMDQQEKERQLFWHSERLALAYGLLKSVPGTIIRIVKNLRVCGDCHTVLKLISTITSRDIYVRDTTRDHAIKNYLWVLIAVAAEL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00220 465 Pfam PPR repeat 56 85 IPR002885 -
Aip04g00220 465 Pfam PPR repeat 230 253 IPR002885 -
Aip04g00220 465 Pfam PPR repeat 25 49 IPR002885 -
Aip04g00220 465 Gene3D Tetratricopeptide repeat domain 173 343 IPR011990 GO:0005515
Aip04g00220 465 Gene3D Tetratricopeptide repeat domain 1 104 IPR011990 GO:0005515
Aip04g00220 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 53 87 IPR002885 -
Aip04g00220 465 TIGRFAM PPR: pentatricopeptide repeat domain 192 226 IPR002885 -
Aip04g00220 465 TIGRFAM PPR: pentatricopeptide repeat domain 56 86 IPR002885 -
Aip04g00220 465 TIGRFAM PPR: pentatricopeptide repeat domain 25 49 IPR002885 -
Aip04g00220 465 TIGRFAM PPR: pentatricopeptide repeat domain 157 191 IPR002885 -
Aip04g00220 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 450 - -
Aip04g00220 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 225 IPR002885 -
Aip04g00220 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 52 IPR002885 -
Aip04g00220 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Aip04g00220 465 Pfam E motif 273 334 IPR046848 -
Aip04g00220 465 PANTHER OS11G0661000 PROTEIN 1 450 - -
Aip04g00220 465 Pfam DYW family of nucleic acid deaminases 370 453 IPR032867 GO:0008270
Aip04g00220 465 Pfam PPR repeat family 154 202 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00220 Aip-Chr4 2555449 2556940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00220 22 453 Glycoside Hydrolase AT3G49170 38.532 1.68e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00220 - - adu:107482332 879.011