LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g00213	ATGGGTGGGTTTAACCTGCTAGTGGTTGGGGTTGTGGTGGTGGTTACCACCATGGTGGGTACGTGCAGCGCTAACTTCTACGACGATTTTGATCTAACATGGGGAGAAAACCGTGCAAAAATATTCAATGGAGGGCAGCTTCTGTCTCTTTCGCTGGATAAAGTGTCTGGCTCTGGCTTCCGATCCAAGAAAGAGTACATGTTTGGCAGAATTGACATGCAACTCAAACTTGTTTCTGGCAATTCCGCTGGCACTGTTACTGCTTATTATTTGTCGTCAGAAGGAGCAACACATGATGAAATAGATTTTGAGTTTCTAGGGAACGTGAGTGGTGAGCCATACATTCTCCATACGAATGTGTTCAGTCAAGGTAAGGGCAACAGAGAGCAACAGTTCTATCTTTGGTTTGATCCCACAACAAATTTCCACACTTATTCTATCATTTGGAAGCCCCACCACATCACATTCTTGGTTGATAACATCCCAATAAGAGTATTCAAGAATGCTGAATCAGTTGGTGTTCCATTCCCAAAGAACCAGCCAATGAGAATTTATTCGAGTCTGTGGAACGCAGATGATTGGGCCACAAGAGGAGGTTTGGTGAAAACCGATTGGTCCAAGGCACCCTTTACGGCCTATTACCGCAACTTCAAGGCCACCGCCTTCTCCGCTACTTCTGCCTTCTCCAATGTTGTAACATCAGAGATACAGGGTAGCGGAGAAGACAGCGTGCTCGATGCCTATGGCAGAAGAAGACTCAGATGGGTTCAGAAGTACTTCATGGTCTATAATTACTGCAACGATCCCAAACGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTATCATTCTTTTAG	945	0.3979	MGGFNLLVVGVVVVVTTMVGTCSANFYDDFDLTWGENRAKIFNGGQLLSLSLDKVSGSGFRSKKEYMFGRIDMQLKLVSGNSAGTVTAYYLSSEGATHDEIDFEFLGNVSGEPYILHTNVFSQGKGNREQQFYLWFDPTTNFHTYSIIWKPHHITFLVDNIPIRVFKNAESVGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATAFSATSAFSNVVTSEIQGSGEDSVLDAYGRRRLRWVQKYFMVYNYCNDPKRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSFF	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g00213	314	PIRSF	EndGlu_transf	2	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aip04g00213	314	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	243	273	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aip04g00213	314	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	1	214	IPR000757	GO:0004553\|GO:0005975
	Aip04g00213	314	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Aip04g00213	314	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Aip04g00213	314	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Aip04g00213	314	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	274	IPR044791	GO:0004553
	Aip04g00213	314	Pfam	Glycosyl hydrolases family 16	27	207	IPR000757	GO:0004553\|GO:0005975
	Aip04g00213	314	CDD	GH16_XET	23	272	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aip04g00213	314	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Aip04g00213	314	Gene3D	-	11	278	-	-
	Aip04g00213	314	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	274	IPR013320	-
	Aip04g00213	314	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15	8	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g00213	Aip-Chr4	2427678	2430365	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g00213	8	272	Glycoside Hydrolase	AT4G14130	74.627	4.74e-152	426

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g00213	K08235		-	gmx:100499905	447.203

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip04g00213	04	2427678	2430365	Aip04g00213	04	2427678	2430365	ECH