Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00209 ATGGAGAATTCTTTGACACACGCTCGTTCTCACAGCCACCACTTCCATTTCCACCCCAATAGCTTCACAAACACCATACATACCGAAACTAAGAGCAGCAAAAACAAAACCATCTTTTTCTTCTTCAAACCTTTTTCAAAATTCCAATCCCTCACAACCCAAGCTCGCCTTGCTTCCTCTATCCACCCACTGTCGCCACCGCCACCGCCACCATCCACCAACAATGCTGTTTTGGACTCAAAGCACACCACCCTTCTTGTGGAAGCTTACCATGTTCACCGTGAATTGGGAATCTTGCTGCGGAAACTTGATAGCATAGATGGTGACCCTCTTAGGATTCTTACTGAAGACGGTGATTGGCCCAAAGAATACTTTTGGGTTGTTGTCAAGTTCCTCAAGAATGCATCAAGGTTTTCGGAAATCCTTCAGGTATTTGACATGTGGAAGAACATTGAGAAATCAAGGATTAGTGAGTTAAACTATAACAAGATAATATCCCTGTTAGTTGAAGGAGGGATGATGGAAGGTGCCATGTCTACATTGCAAGAGATGAAAATTCATGGTCTCAAGCCTTCTTTGGACACCTACAATCCGATTATCCACGGTTTCTCCAGAGAAGGTAAATTCGGCGAAGCTTTGCGTTTTCTTGATGAGATGAAAGAATTTGATTTAGAGCCAGACACTGAGACTTATGATGGATTGATACGAGCTTATGGTAAGTTTAAAATGTATGATGAGATTGGTAAGTGTGTGAAAAAGATGGAGTTGGATGGTTGTTCTCCTGATCATATCACTTATAATATACTTATACAAGAGTATTCACGCGGTGGGGTACTCCAAAGGATGGAAAAAATATATCAAAGAATGATTTCGAAAAGAATGCGTTTGCAATCTTCAACATTGATTGCAATGCTCGATGCTTACACCACATTTGGTATGGTTGAAAAGATGGAAATGTTTTATAGAAAATTGCTGAACTCAAAAACACGTCTAGATGATGATTTGATACGAAAAGTGGCTGAGGTTTATATCAAGAACTACATGTTTTCTAGGTTAGAGGACCTTGGACTAGATTTACGTTCAGCATTCGGTGAATCTGACCTTGTATGGTGCCTTCGCCTCCTTTCTTATGCATGTCTTCTGAGTCGAAAAGGCATGGATATAATTGTTCAAGAAATGCGAGATGCCAAGGTTCATTGGAATGTTACCACTGCCAATATCATCATGTTGGCTTATGTGAAGATGAGAGATTTCAAGAGGTTGAGGATTTTGCTATCGCTATTCCCAATGTATCGAGTGAAGCCTGATATAGTCACTGTTGGAATTGTATTCGATGCAAACAGAATCGGCTTTGATGGTAGTGGAACTTTAGAAGCATGGAGAAGAATGCGGTATCATTACCGAGTTGTAGAAATGGAAACAGATTCTCTGGTTCTTACTGCATTTGGTAAAGGCCATTTTCTAAAAAGCTGCGAAGAAATGTACTCTTCCCTTCACCCAGAGTATAGAGAAAGGAAAACATGGACATATCATGACCTTATTACTTTAGTATCAATGTATAGTGGCAAGTAA 1572 0.4014 MENSLTHARSHSHHFHFHPNSFTNTIHTETKSSKNKTIFFFFKPFSKFQSLTTQARLASSIHPLSPPPPPPSTNNAVLDSKHTTLLVEAYHVHRELGILLRKLDSIDGDPLRILTEDGDWPKEYFWVVVKFLKNASRFSEILQVFDMWKNIEKSRISELNYNKIISLLVEGGMMEGAMSTLQEMKIHGLKPSLDTYNPIIHGFSREGKFGEALRFLDEMKEFDLEPDTETYDGLIRAYGKFKMYDEIGKCVKKMELDGCSPDHITYNILIQEYSRGGVLQRMEKIYQRMISKRMRLQSSTLIAMLDAYTTFGMVEKMEMFYRKLLNSKTRLDDDLIRKVAEVYIKNYMFSRLEDLGLDLRSAFGESDLVWCLRLLSYACLLSRKGMDIIVQEMRDAKVHWNVTTANIIMLAYVKMRDFKRLRILLSLFPMYRVKPDIVTVGIVFDANRIGFDGSGTLEAWRRMRYHYRVVEMETDSLVLTAFGKGHFLKSCEEMYSSLHPEYRERKTWTYHDLITLVSMYSGK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00209 523 Pfam PPR repeat 161 188 IPR002885 -
Aip04g00209 523 Pfam PPR repeat 264 293 IPR002885 -
Aip04g00209 523 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 27 520 - -
Aip04g00209 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Aip04g00209 523 Gene3D Tetratricopeptide repeat domain 358 522 IPR011990 GO:0005515
Aip04g00209 523 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 27 520 - -
Aip04g00209 523 Pfam PPR repeat family 195 239 IPR002885 -
Aip04g00209 523 Gene3D Tetratricopeptide repeat domain 247 330 IPR011990 GO:0005515
Aip04g00209 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Aip04g00209 523 Gene3D Tetratricopeptide repeat domain 120 246 IPR011990 GO:0005515
Aip04g00209 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Aip04g00209 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Aip04g00209 523 TIGRFAM PPR: pentatricopeptide repeat domain 230 262 IPR002885 -
Aip04g00209 523 TIGRFAM PPR: pentatricopeptide repeat domain 161 192 IPR002885 -
Aip04g00209 523 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Aip04g00209 523 TIGRFAM PPR: pentatricopeptide repeat domain 264 294 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00209 Aip-Chr4 2402097 2404905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00209 114 341 Miscellaneous Gene Families AT4G11690 29.437 4.79e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00209 - - ahf:112795661 988.023