Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00207 ATGTCGGAGATAGCGAACACAGATCCCGAGGGGGTCGACGGAGTGCGGATGACGTGGAACATATGGCCAAGCACGAAGGTCGAAGCGAGCAAGTGCGTGATCCCACTCGCCGCCACAATCTCCATCATACGCCCTCACACGGACATCCCCCGCCTCCCATACTCCCCGTTACGCTGCAAAACCTGCACCTCCGCCCTCAACCCCTTCTCGCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTATCAGCGCAACCGCTTCCCCCCTCACTACTCCCAAATTTCCGAAACCAACCTCCCCGGTGAGCTCTACCCTCAGTACACTACCATCGAGTACACCGTCCCAACCGTCTCGTTAGACCCCGCTTCCCTAACGCACTCACAGGCGCCTCCGCCGCCTCCTCCGCCGGTCTTTGTATTCGTCCTTGATACCTGTATGATCGCTGAGGAATTGGAATTCGCAAAGTCCGCCCTCCGGCAGGCGATCGAGCTGCTCCCGGATAATGCTCTCGTCGGATTCGTGTCGTTCGGGACGCAGGTGCAGGTCCATGAATTGGGATTCAGTGATATGTCTAAAGTTTATGTGTTCCGTGGAGCGAAGGAGATTTCCAAGGACCAGATTTTGGACCAGCTGGGACTTGGAAGGGTGCCTCAGAAGGGATTGGCGCAGGGCGGCCCCGGTGGTTTCGTTCCGGCTTCCTCTGGCGTTTCGCGGTTCTTGCTGCCTGCTTCGGACTGCGAATACACTCTCAATTCGCTACTAGATGAGTTGCAGACTGACCAATGGCCTGTCCCACCAGCCAGTCGTCCAGCACGGTGCACTGGTGTGGCTTTGAGTGTTGCGGCGGGTTTGCTTGGTGCTTGTATTCCTGGGACAGGGGCTAGAATCATTGCGTTGGTTGGAGGTCCTTGCACTGAAGGACCTGGCACGATTGTGTCAAAGGATCTATCTGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCTCCATACTTTAAGAAGGCAGTCAAATTTTATGAGAGTATTGCCAAACAGCTGGTTAGCCAGGGTCATGTTTTAGATCTTTTTGCCTCTGCACTTGATCAGGTTGGAGTTGCGGAAATGAAAGTCGCAGTTGAAAGAACTGGTGGCCTTGTTGTCTTGTCTGAAAGTTTTGGTCATTCAGTCTTTAGGGACTCTTTTAAGCGCGTTTTTGAGGATGGGGAACAAGCTCTTGGTCTCTGTTTCAATGGTACCCTCGAGGTAAATTGTTCAAAGGAAATCAAAATTCAGGGAATAATTGGACCTTGCACATCATTGGAAAAGAAAGGGCCTTCTGTTGCTGACACTGTAATAGGAGAGGGGAATACAACAGCATGGAAGATGTGTGGTCTTGACAAGAGTACGTGCTTGACAGTGATGTTTGATCTTTCATCAAGTGACCGGTCAAACACACCAAATGCTGCCAACCAACAGCTGTACCTGCAGTTTCTTACAAGCTACCAGAGCCCAGATGGTCAATTAGTGCTTCGAGTCACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTTAGCACTGAGGAACTGATTCAAGGATTTGACCAAGAAACTGCTGCCGTGGTAATGGCTAGATATGCTTCTTTGAAAATGGAGACTGAGGAAGCATTTGATGCCACACGGTGGTTGGATCGATACCTCATTCGCGTCTGTTCTAAATTTGGTGACTATCGCAAGGATGATCCATCATCTTTTACATTAAACCCTGCATTTTCACTCTTCCCCCAATTTATGTTTAATCTGCGGCGGTCACAGTTTGTACAGGTTTTCAACAACAGTCCAGATGAGACTGCCTACTTCCGCATGTTGTTAAACAGAGAAAATATTAGTAATGCTGCTGTCATGATTCAGCCATCGCTAATATCATATTCATTCAATTCACTACCTGGCCCTGCCTTATTAGATGTAGCATCCATCGCTGCAGACCGCATTCTGTTGTTAGATTCATATTTTAGTGTGGTAATTTATCACGGGATGACAATAGCTCAGTGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCACAACTATTACAAGCTCCACATCATGATGCCCAAATGATAATTAGAGAACGTTTCCCTGTTCCTAGATTGGTAGTGTGCGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCGAAGCTGAATCCATCAGCAACATATAATAATGCACACGAGATGGCTGCGGGTTCAGACATAATCTTCACTGATGATGTGAGTCTTCAAGTTTTCTTTGAGCATCTCCAAAGGCTGGCTGTCCAATCTTAA 2331 0.4869 MSEIANTDPEGVDGVRMTWNIWPSTKVEASKCVIPLAATISIIRPHTDIPRLPYSPLRCKTCTSALNPFSRVDFTAKIWICPFCYQRNRFPPHYSQISETNLPGELYPQYTTIEYTVPTVSLDPASLTHSQAPPPPPPPVFVFVLDTCMIAEELEFAKSALRQAIELLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGAKEISKDQILDQLGLGRVPQKGLAQGGPGGFVPASSGVSRFLLPASDCEYTLNSLLDELQTDQWPVPPASRPARCTGVALSVAAGLLGACIPGTGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYESIAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFRDSFKRVFEDGEQALGLCFNGTLEVNCSKEIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPNAANQQLYLQFLTSYQSPDGQLVLRVTTVTRRWVDSSVSTEELIQGFDQETAAVVMARYASLKMETEEAFDATRWLDRYLIRVCSKFGDYRKDDPSSFTLNPAFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPGPALLDVASIAADRILLLDSYFSVVIYHGMTIAQWRNLGYQNQPEHQAFAQLLQAPHHDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00207 776 Pfam Sec23/Sec24 trunk domain 136 403 IPR006896 GO:0006886|GO:0006888|GO:0030127
Aip04g00207 776 Pfam Sec23/Sec24 beta-sandwich domain 414 518 IPR012990 -
Aip04g00207 776 CDD Sec23_C 624 744 IPR037550 GO:0030127|GO:0090114
Aip04g00207 776 Gene3D - 10 515 - -
Aip04g00207 776 SUPERFAMILY Helical domain of Sec23/24 532 634 IPR036175 GO:0006886|GO:0006888|GO:0030127
Aip04g00207 776 Pfam Sec23/Sec24 helical domain 532 628 IPR006900 GO:0006886|GO:0006888|GO:0030127
Aip04g00207 776 Gene3D - 53 112 - -
Aip04g00207 776 Gene3D Severin 634 738 IPR029006 -
Aip04g00207 776 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 775 IPR037364 -
Aip04g00207 776 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 635 775 IPR036180 -
Aip04g00207 776 SUPERFAMILY Zn-finger domain of Sec23/24 48 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip04g00207 776 SUPERFAMILY beta-sandwich domain of Sec23/24 8 531 - -
Aip04g00207 776 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 775 - -
Aip04g00207 776 SUPERFAMILY vWA-like 138 404 IPR036465 -
Aip04g00207 776 Pfam Gelsolin repeat 644 732 IPR007123 -
Aip04g00207 776 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Aip04g00207 776 Gene3D Sec23/Sec24 helical domain 529 773 - -
Aip04g00207 776 Gene3D von Willebrand factor, type A domain 138 412 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00207 Aip-Chr4 2378506 2388376 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00207 K14006 - gmx:100813940 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00207 04 2378506 2388376 Aip04g00207 04 2378506 2388376 ECH