Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip04g00174 | ATGTCTCAGGTGGATAACAGGAATTCTTCAGCTACCAAGCGTGCTAGGACTGATGGTAGTCGTAGAGAGGATGATTGGACTTGCCCCAGCTGCGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAACTGTACTCAACCGAGGCCTGCTGATCATAATTCGAAATCTGCTGCCAAACCTCTACAAGCTCCACAAGGTTACTCATCCTCAGCTCCTTATTTAGGATCCAATACTCCCTCCTCAATATATCTTGGAGTCCCACCATATGGATCTTCTCTATTCAATGGGTCATCTATTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCTTATCACTACAATTATGCAAGTCGCCTTTCTGCTGGCAGTCCTTATCGGCCATTGCATTTATCTGGGCCAACACCCTACTCAAGCGGATCCATGATGGGAAATGGTGGAATATATGGCATGCCACCACTCTTAGACCGATATGGACTGGGTATGCCTATTGGACCTGGAGCAATGGGTCCTAGGCCGGGATTTTTTCCTGAGGACAAGGCTCCAAAAAAGGGTGCAGATGCAACTCGTGACAACGATTGGACATGTCCAAAATGTGGCAATGTCAACTTCTCATTTAGACCTGTATGCAACATGAGAAAGTGCAATACACCGAAGCCTGGATCCCAGCCCTCGAAGTCAGACAAAAATTCAAAGCAAAAGATGCCTGAAGGGAGCTGGAAGTGTGACAAGTGTAACAACATAAACTATCCATTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAAGCAGAGAAATCAACCTCACCAGCTCCAGATCAAAACGATCAGTGA | 858 | 0.4615 | MSQVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSIPPYDVPFSGGSAYHYNYASRLSAGSPYRPLHLSGPTPYSSGSMMGNGGIYGMPPLLDRYGLGMPIGPGAMGPRPGFFPEDKAPKKGADATRDNDWTCPKCGNVNFSFRPVCNMRKCNTPKPGSQPSKSDKNSKQKMPEGSWKCDKCNNINYPFRTKCNRQNCGADKPAEAEKSTSPAPDQNDQ | 285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip04g00174 | 285 | SMART | zf_4 | 241 | 267 | IPR001876 | - | |
| Aip04g00174 | 285 | SMART | zf_4 | 24 | 50 | IPR001876 | - | |
| Aip04g00174 | 285 | SMART | zf_4 | 195 | 221 | IPR001876 | - | |
| Aip04g00174 | 285 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Aip04g00174 | 285 | PANTHER | OS08G0521400 PROTEIN | 5 | 276 | - | - | |
| Aip04g00174 | 285 | Pfam | Zn-finger in Ran binding protein and others | 22 | 44 | IPR001876 | - | |
| Aip04g00174 | 285 | Pfam | Zn-finger in Ran binding protein and others | 239 | 269 | IPR001876 | - | |
| Aip04g00174 | 285 | Pfam | Zn-finger in Ran binding protein and others | 194 | 223 | IPR001876 | - | |
| Aip04g00174 | 285 | SUPERFAMILY | Ran binding protein zinc finger-like | 189 | 225 | IPR036443 | - | |
| Aip04g00174 | 285 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| Aip04g00174 | 285 | SUPERFAMILY | Ran binding protein zinc finger-like | 16 | 54 | IPR036443 | - | |
| Aip04g00174 | 285 | MobiDBLite | consensus disorder prediction | 264 | 285 | - | - | |
| Aip04g00174 | 285 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
| Aip04g00174 | 285 | PANTHER | ZINC FINGER PROTEIN | 5 | 276 | - | - | |
| Aip04g00174 | 285 | SUPERFAMILY | Ran binding protein zinc finger-like | 233 | 270 | IPR036443 | - | |
| Aip04g00174 | 285 | Gene3D | - | 228 | 271 | - | - | |
| Aip04g00174 | 285 | Gene3D | - | 190 | 225 | - | - | |
| Aip04g00174 | 285 | Gene3D | - | 14 | 54 | - | - | |
| Aip04g00174 | 285 | MobiDBLite | consensus disorder prediction | 218 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip04g00174 | Aip-Chr4 | 1917841 | 1923083 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip04g00174 | 196 | 278 | EF-hand Containing Proteins | AT1G55040 | 30.120 | 4.15e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip04g00174 | - | - | gmx:100796535 | 569.311 |