Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00173 ATGTGGCTGCTATTGTTGTTGTTGGTGGCGGTTATTGTGGGTAGCGGCGACGGTGCCGGGGAAGATTTGACACAAAAGTGTGGTCAAGTGGTGCAGAAGGTAATACCGTGCCTGAACTATGCGACGGGGAAGGCGAGTACCCCGTCGAAGGAGTGTTGCGAGGCGGCAACCAAGATAAGGGAGAGTGACCCTGACTGCTTGTGCTTCATCATTCAGCAGACGCATCATGGGAACCCTGAGAGTAAGAGCTTGGGCATTCAAGAGGACAAGCTTCTTCACCTCCCTTCTCTCTGTAACGTTAAGAACGCTAATATCGCCGACTGTCCTAAGCTTCTAGGTTTATCTCCAAGCTCCCCAGATGCTGCTATCTTCAAAAATGCTTCCAAGGCAACTCCGGCTGCACCTTCATCCAGCCAAGCTCCACCGTTGTCATCGACGCCGAAGTCACAAAGCCAAAACGATTCCTATGGAGTTATGCTTAGACCTCCCATGACCATGGAGCTTATAATGCTTGCTATGGCCATTGTTCTGATTGCAATTCCAACCGGATTTGTCACACTTCATATATAA 570 0.4982 MWLLLLLLVAVIVGSGDGAGEDLTQKCGQVVQKVIPCLNYATGKASTPSKECCEAATKIRESDPDCLCFIIQQTHHGNPESKSLGIQEDKLLHLPSLCNVKNANIADCPKLLGLSPSSPDAAIFKNASKATPAAPSSSQAPPLSSTPKSQSQNDSYGVMLRPPMTMELIMLAMAIVLIAIPTGFVTLHI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00173 189 MobiDBLite consensus disorder prediction 127 157 - -
Aip04g00173 189 MobiDBLite consensus disorder prediction 130 157 - -
Aip04g00173 189 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 25 108 IPR036312 -
Aip04g00173 189 SMART aai_6 27 108 IPR016140 -
Aip04g00173 189 Pfam Probable lipid transfer 19 108 IPR016140 -
Aip04g00173 189 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Aip04g00173 189 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Aip04g00173 189 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Aip04g00173 189 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 4 182 - -
Aip04g00173 189 CDD AAI_LTSS 36 100 - -
Aip04g00173 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 4 182 IPR043325 -
Aip04g00173 189 Gene3D - 24 105 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00173 Aip-Chr4 1896859 1901235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00173 26 177 Acyl Lipid Metabolism Gene Families AT1G27950 49.677 9.40e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00173 - - adu:107482371 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00173 04 1896859 1901235 Aip03g04969 03 134366362 134367057 PCT