Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04964 ATGAGAACAAGAAGAGGATTGTGTTATTCTGCACCTGGAGTAGTAACAAGGATGTGTCCCGTAGGGGTTGGGAAGAGAAAGAGCAACAAGTTGCAGCATAATGTTTCCGGAGACTCTAATATTTATAGCCTCAGGAAAAGGCACAAGAGGTTGCCGGAAAAGGCCGCCGACGAATGCGATTTTTTCGAGTCTTTGCCGGACGACCTTGTAATCTCTATCTTCTGCAAGCTTAGCTCCTCCGCTACTTCCCCTTCCGATTTTGTCAATGTTTTAATCACATGCAAGAGATTAAACAGTTTAGGTCTCCATTCTCTTGTGTTATCGAAAGCATCTCCGAGGACTTTCTCTATTAGAGCAAAGAACTGGTGCGATTCGGCGCACCGGTTCCTCAAACAGTGTGCAGATGCAGGAAATGTTGAAGCATGCTATACTCTAGGCATGATTCGGTTCTACTGTTTGCAGAACAGAGGGAGCGGGGCTTCGCTCATGGCCAAGGCAGCCATGAACTCTCACGCGCGAGCTCTCTATTCGCTTGCCGTTATACAGTTCAACGGTAGCGGAGGCACCAAGAACGACAAAGACCTCCGTGCCGGAGTTGCCTTGTGCGCACGCGCCGCCTTCCTCGGCCACGTCGACGCGCTGCGGGAGCTAGGCCACTGCCTTCAGGATGGATACGGCGTTCGCCAGAACATCGCGGAGGGGAGGCGCTTCCTTGTTCAGGCCAACGCCAGGGAACTCGCCGCCGTGATCTCCGCCGGAGCTGCTGCGCGCCAGTGGCTGACATGGAACATCCACCCGCTCCGCCAGTTCGCCGGGTCAGCGGCAGGTTGCCCGCTGCTGAGCGACTTCGGGTGCAATGTTCCGATGCCGGAGGCACATCCGGCGAGCAGGTTCCTGTCGGAGTGGTTCGCGGCTCGGGACGCGTCTGCCGGTCCGGGACTGAGGTTGTGCTCTCATGCCGGTTGCGGTCGGCCAGAGACGAGGAAGCACGAGTTTCGAAGGTGCTCGGTGTGTGGCGCGGTGAACTATTGTTCACGCGCCTGCCAGGCGCTTGATTGGAAGTTTCGGCACAAGGCGGAGTGCACCCCCGTGGAGCGGTGGCTCCAGGACGACGGGGATGACGTCGTTGATGACGACGTAGGCGCTGACGCCGTGATGGCGGTGGATAGTTAG 1173 0.5686 MRTRRGLCYSAPGVVTRMCPVGVGKRKSNKLQHNVSGDSNIYSLRKRHKRLPEKAADECDFFESLPDDLVISIFCKLSSSATSPSDFVNVLITCKRLNSLGLHSLVLSKASPRTFSIRAKNWCDSAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHARALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVISAGAAARQWLTWNIHPLRQFAGSAAGCPLLSDFGCNVPMPEAHPASRFLSEWFAARDASAGPGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECTPVERWLQDDGDDVVDDDVGADAVMAVDS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04964 390 ProSiteProfiles Zinc finger MYND-type profile. 319 361 IPR002893 -
Aip03g04964 390 SUPERFAMILY HIT/MYND zinc finger-like 316 366 - -
Aip03g04964 390 Gene3D - 309 365 - -
Aip03g04964 390 Pfam MYND finger 321 361 IPR002893 -
Aip03g04964 390 SUPERFAMILY HCP-like 122 241 - -
Aip03g04964 390 PANTHER MYND DOMAIN-CONTAINING 43 390 IPR044508 -
Aip03g04964 390 SUPERFAMILY F-box domain 53 117 IPR036047 GO:0005515
Aip03g04964 390 Gene3D Tetratricopeptide repeat domain 110 262 IPR011990 GO:0005515
Aip03g04964 390 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 43 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04964 Aip-Chr3 134274002 134275829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04964 - - gmx:100798174 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00991 10 12898352 12900154 Aip03g04964 03 134274002 134275829 PCT