Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04954 ATGCCTGGATGCATTGCTGGTAAGAAGTGGTTCACAGAACCGAATATGTGTTTTTCTAATTTACCCAATAAGGAAAATCAAACACTTTCTAAGAGCAAGCATTCTGTGCGCTCTGAGTTATCGGATAAGGATGATGATAGCTCGATTCTACCTCGGCTGCCTGATGATGTTTCCAAGTATTGCTTAGCACTTGTGCCTCATTCGGACCTCCCGGCTATGGCCGGTGTTTGTAAGAGATGGAGGTGTTTCATTCAGAGCAAAGAATTTATAATGGTAAGAAAATTGGCTGGCTTGGTTGAGGAATGGCTTTTCCTGTTAACTGCAGATAAAGAAGGGAAAGGAAGCCATTGGGAGGTAGTGGATTGTCAGGGTCAGAATCGTCGATCTCTTCCACCAATGCCTGGTCCAACAAAGGCTGGATTCGGGGTGGTGGTTGTTAATGGGAAGCTACTTGTCATGGCTGGCTATTCAGTTATTGATGGAACTGCCACTGCCTCACCAGAGGTTTACCAATACAATTCTTGTGTCAACAGTTGGAGCAGGTTATCAAACATGAATGTGGCTCGATATGACTTTGCTTGTGCTGAGGTCAACGGCTTGGTGTACGCTGTTGGAGGCAATGGAGTAGATGGCGACAGCCTCTCCAGTGTCGAGGTCTATGATCCAGAAACTGACAAATGGACATTGATTGAGAGCCTTCGTCGGCCGAGACGAGGTTGCTTCGCGTGTGGATTCGAAGGGAAGCTGTACGTGATGGGTGGAAGGTCGAGTTTTACAATTGGAAACTCAAAATTTGTTGATGTTTACAATCCTGAAAGGCACAGTTGGTGTGAGATGAAAAATGGTTGTGTCATGGTGACTGCTCATGCAGTACTGGGAAAGAAGCTGTTCTGTATGGAGTGGAAGAATCAGAGGAAGTTGGCAATCTTCAATTCAGAGGACAATACATGGAAAATGGAGCCTCTACCTTTGACTGGGAGCTCCAGTATCGGTTTCCGGTTCGGAATTCTTGATGGTAAACTCTTGCTGTTCTCACTGGAGGAGGAACCTACATGCAAAACTTTGTTGTATGATCCAACTGCAGCCCCTGGATCAGAGTGGCAAACAAGTGAGATCAAACCATCTGGGTTATGCTTGGGCAGTGTAACAGTCAAGGCATGA 1161 0.4591 MPGCIAGKKWFTEPNMCFSNLPNKENQTLSKSKHSVRSELSDKDDDSSILPRLPDDVSKYCLALVPHSDLPAMAGVCKRWRCFIQSKEFIMVRKLAGLVEEWLFLLTADKEGKGSHWEVVDCQGQNRRSLPPMPGPTKAGFGVVVVNGKLLVMAGYSVIDGTATASPEVYQYNSCVNSWSRLSNMNVARYDFACAEVNGLVYAVGGNGVDGDSLSSVEVYDPETDKWTLIESLRRPRRGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPERHSWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNSEDNTWKMEPLPLTGSSSIGFRFGILDGKLLLFSLEEEPTCKTLLYDPTAAPGSEWQTSEIKPSGLCLGSVTVKA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04954 386 SMART kelc_smart 200 247 IPR006652 GO:0005515
Aip03g04954 386 SMART kelc_smart 149 199 IPR006652 GO:0005515
Aip03g04954 386 SMART kelc_smart 248 293 IPR006652 GO:0005515
Aip03g04954 386 PANTHER OS02G0202900 PROTEIN 1 386 IPR045887 -
Aip03g04954 386 Pfam Kelch motif 236 281 IPR011498 GO:0005515
Aip03g04954 386 ProSiteProfiles F-box domain profile. 47 95 IPR001810 GO:0005515
Aip03g04954 386 MobiDBLite consensus disorder prediction 29 48 - -
Aip03g04954 386 Pfam Kelch motif 139 186 IPR006652 GO:0005515
Aip03g04954 386 Pfam Kelch motif 188 233 IPR006652 GO:0005515
Aip03g04954 386 SUPERFAMILY Kelch motif 100 345 IPR015915 GO:0005515
Aip03g04954 386 MobiDBLite consensus disorder prediction 30 48 - -
Aip03g04954 386 Pfam F-box domain 51 88 IPR001810 GO:0005515
Aip03g04954 386 Gene3D - 89 383 IPR015915 GO:0005515
Aip03g04954 386 PANTHER KELCH REPEAT F-BOX PROTEIN 1 386 - -
Aip03g04954 386 SUPERFAMILY F-box domain 36 89 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04954 Aip-Chr3 134155691 134157186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04954 53 231 Miscellaneous Gene Families AT4G33900 28.351 3.84e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04954 - - adu:107482114 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04954 03 134155691 134157186 Aip03g04954 03 134155691 134157186 ECH
Aip10g01016 10 13380130 13380738 Aip03g04954 03 134155691 134157186 PCT