Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04505 ATGAGGATTCAATCGTGGCTAAAAACATGCTCCACGGCCACCGCTACGCACCAATCCACCATCCCCATAGACACAAGCAGCAGCAGGTATTATTCCTCCGGATCCGAAGCTCTCAGTTCTTCCACAACCTCTCAAGAAAGCAGTATACTCAGCGACCTCTCCATACAGACCCTCCCATCCCTTCCTTCTCTTCACAAACTCACACCTCAAAACCTTAACTTCTCAGTCTCCCACCATTGCCAAACCACCTTCACACTGCAACCTCAACGGGAACACTCTCGCCCCGTCACCTCCCTCGCTCTCCACGGCCACCTCCTCTACGCTGCCACCGCACACCAAATCAACGTCTACGATCTTAACACGTGCGCCACCCTCCAAATCCTAAACTCAGAATATCCGTCTTCAGGTTCCACCAAGGCCATCACCTTCTGCAATGGAATGGTCTTCACCACCCACCAAGACTGCAAGATCCGCGTATGGAACTCTAATAAACACCGCATGTTAACTGCTCTTCCAACCACCAACGACCGTCTACGCCGTTTCCTCTTCCCCAAGAACTACGTCACGGTGCGCCGCCACCAGAAGCGGTTATGGATTGAGCACGCAGACGCCGTTACCGGACTCGCCGTCTCAAAATTTAACGATTTTATATACTCCGTTTCATGGGATAAAACCCTCAAGGTGTGGCGAGTCTCGGACCTACGTTGTTTGGAGTCAGTGAAGGCTCACGAGGACGCGGTCAACGCGGTCGCAGTGTCCAAAGATGGAACCGTCTATACTGGATCCGCAGACAGGAGAATAAGGGTCTGGGCAAGAGCCAACGGGGAGAAGCGTCACGCGCTGGTGGCGACGTTGGAGAAGCACCGTTCAGCGGTTAATGCGCTTGCGTTAAACGACGATGGTTCGGTTCTGTTTTCCGGTGCGTGCGACCGTTCCATATTGGTGTGGGAGAGAGAGGATAGCGCCAATCACATGGTGGTTAGTGGGGCCCTCAGGGGACACCAGAAGGCTATACTGTGCTTGATTAACGTCTCTGATTTGTTGCTGAGTGGGTCAGCTGATCGGACGGTCAGGATTTGGAAGCGGGGTTTTGATGGGCAGTTCTGCTGCCTGGCGCTTCTTGACGGTCACCGGAAACCAGTGAAGTCGTTAGCAGCATCAGTACAAGTGCGTCATCAAGATGAAGATTCCCAAAACGATATCGTTTCGGTCTTCAGTGGATCACTTGATGGCGAGATCAAGATTTGGAAGGTTTCCTTAGCTTCACTACCAACTGACCTTCTCAGAAATTGA 1293 0.5236 MRIQSWLKTCSTATATHQSTIPIDTSSSRYYSSGSEALSSSTTSQESSILSDLSIQTLPSLPSLHKLTPQNLNFSVSHHCQTTFTLQPQREHSRPVTSLALHGHLLYAATAHQINVYDLNTCATLQILNSEYPSSGSTKAITFCNGMVFTTHQDCKIRVWNSNKHRMLTALPTTNDRLRRFLFPKNYVTVRRHQKRLWIEHADAVTGLAVSKFNDFIYSVSWDKTLKVWRVSDLRCLESVKAHEDAVNAVAVSKDGTVYTGSADRRIRVWARANGEKRHALVATLEKHRSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRGFDGQFCCLALLDGHRKPVKSLAASVQVRHQDEDSQNDIVSVFSGSLDGEIKIWKVSLASLPTDLLRN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04505 430 Gene3D - 189 276 IPR015943 GO:0005515
Aip03g04505 430 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 422 IPR045182 -
Aip03g04505 430 Gene3D - 69 188 IPR015943 GO:0005515
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Aip03g04505 430 Gene3D - 277 426 IPR015943 GO:0005515
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 317 - -
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 270 - -
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 361 - -
Aip03g04505 430 Pfam WD domain, G-beta repeat 235 270 IPR001680 GO:0005515
Aip03g04505 430 Pfam WD domain, G-beta repeat 330 361 IPR001680 GO:0005515
Aip03g04505 430 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515
Aip03g04505 430 Pfam WD domain, G-beta repeat 369 417 IPR001680 GO:0005515
Aip03g04505 430 Pfam WD domain, G-beta repeat 200 229 IPR001680 GO:0005515
Aip03g04505 430 SUPERFAMILY WD40 repeat-like 88 419 IPR036322 GO:0005515
Aip03g04505 430 PANTHER F21J9.19 16 422 - -
Aip03g04505 430 SMART WD40_4 77 118 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 324 361 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 367 417 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 233 271 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 124 161 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 191 230 IPR001680 GO:0005515
Aip03g04505 430 SMART WD40_4 278 317 IPR001680 GO:0005515
Aip03g04505 430 CDD WD40 90 417 - -
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 361 IPR001680 GO:0005515
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 280 IPR001680 GO:0005515
Aip03g04505 430 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Aip03g04505 430 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Aip03g04505 430 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Aip03g04505 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04505 Aip-Chr3 129324029 129325464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04505 234 417 Acyl Lipid Metabolism Gene Families AT3G18860 27.895 1.13e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04505 - - lang:109361739 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04505 03 129324029 129325464 Aip03g04505 03 129324029 129325464 ECH