Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04504 ATGGGAAACTTGGACCCCACGGCCGAGGAGTTCAGGCCCAGAAACTATACCCACGGAGCTCCGCCTCCAACTCTTCTGAGGCCACCGGCACCACCTCATTCTCAGCCGTGGTACCCTTACTTAGGTCATCAAGTTGGGGTTTGGTGTCCCACGTCATCTCCTACGAGGTCGCTGATGCTAGGCTTGGTACCCTCCGGAACGGTGGTTTCAGAAGCATGGTTGATGAGGGAGCTTGGAGCGTTCGGGGACGTGAGAGGGGTTCGGATGGAAGGGGTTGGTGAGGGAATGGTGATTGCCATGGTTGACTTCTATGACCTCCGACACGCGGAGGCTGCGTTCACCGCCATTCTGGGCCACCACATGAACATGCATGACTACGCCATGGCGGGTGGTGTGTTGTGGGCACAGTACATGGTACCCTCATGGGATGATGGGGATAACCAAGGGACGCTGCTGATTTTTAATTTGGATTTACATATGGACGCTATCGCTGTCACTAGTATCTTCCAGCCTTTTGGTGCTGTAAAGGAGGTGAGGCATACCCCACTGAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACATAAGAGACGCAGCAAGGGCTTTGAAGCACATGAATGGCAACCACATTCATGGGAAACCCCTCATTATTGAATTCGGACGGCCAGGAGGAGGACAGTACCGGAAATCAGGTGTTGTTACCAAGGGTTGTTGTTATGATGATAAAGATAATCCTAGTGGGGGCGAAGAAGAGAGAAACAACCGGTGTGATGATGAGTCCATTGTAGGAGACACGAAGCAGCCAAGTAGGCGTCATAGGAAGGGAAAGCATGCAAAGAAGCAGCATCATCTTGATGAAACTCGCCGCTTCTTAATCTCTGCACATGATGGAGACTCTAGAACAACCGTCATGATTAAGAACATACCCAATAAGTACAGCCAGAAGCTACTGTTGAGCATGTTGGATAACCACTGTAATCATTGCAATGAGAAGATTCGGGAAGGCGGCCGTGACCACCAGCCCTTGTCCTCCTATGACTTCCTCTACCTTCCAATTGATTTCAACAGGAACAAGTGCAATGTGGGATACGGGTTTGTAAACATGACGTCTCCGGAGGCAACAATGAGACTCTACAAGGCCTTCCATGGCCAACCTTGGCAAGTTTTCAATTCAAGAAAAATTTGTGAGGTTACCTACGCCAGGGTCCAGGGATTGGAAGCATTGAAGGAGCATTTCAAGAAGTCCAAGTTGGGATACGAGATGGAGAATTGCCTGCCAGTAATGTTTTCACCTCCTCGAGATGGGAGGCAGCTGACACAGCCACTTGCAATAGTTGCTCATGCTCATCACCAATCACTCATTGTTAGTAGTAGTACCCAAAGTGACGGCGTTGAAGGTCAATCATCATCATAA 1413 0.4954 MGNLDPTAEEFRPRNYTHGAPPPTLLRPPAPPHSQPWYPYLGHQVGVWCPTSSPTRSLMLGLVPSGTVVSEAWLMRELGAFGDVRGVRMEGVGEGMVIAMVDFYDLRHAEAAFTAILGHHMNMHDYAMAGGVLWAQYMVPSWDDGDNQGTLLIFNLDLHMDAIAVTSIFQPFGAVKEVRHTPLKKNQRFVEFFDIRDAARALKHMNGNHIHGKPLIIEFGRPGGGQYRKSGVVTKGCCYDDKDNPSGGEEERNNRCDDESIVGDTKQPSRRHRKGKHAKKQHHLDETRRFLISAHDGDSRTTVMIKNIPNKYSQKLLLSMLDNHCNHCNEKIREGGRDHQPLSSYDFLYLPIDFNRNKCNVGYGFVNMTSPEATMRLYKAFHGQPWQVFNSRKICEVTYARVQGLEALKEHFKKSKLGYEMENCLPVMFSPPRDGRQLTQPLAIVAHAHHQSLIVSSSTQSDGVEGQSSS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04504 470 Gene3D - 143 229 IPR012677 -
Aip03g04504 470 CDD RRM3_EAR1_like 300 404 IPR034458 -
Aip03g04504 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 222 IPR000504 GO:0003723
Aip03g04504 470 Pfam RNA recognition motif 2 300 413 IPR007201 -
Aip03g04504 470 Gene3D - 239 414 IPR012677 -
Aip03g04504 470 MobiDBLite consensus disorder prediction 238 286 - -
Aip03g04504 470 MobiDBLite consensus disorder prediction 242 268 - -
Aip03g04504 470 SUPERFAMILY RNA-binding domain, RBD 123 224 IPR035979 GO:0003676
Aip03g04504 470 SUPERFAMILY RNA-binding domain, RBD 302 401 IPR035979 GO:0003676
Aip03g04504 470 PANTHER RNA BINDING PROTEIN 27 230 - -
Aip03g04504 470 PANTHER RNA BINDING PROTEIN 252 456 - -
Aip03g04504 470 SMART rrm1_1 150 218 IPR000504 GO:0003723
Aip03g04504 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
Aip03g04504 470 PANTHER TERMINAL EAR1-LIKE 1 27 230 - -
Aip03g04504 470 PANTHER TERMINAL EAR1-LIKE 1 252 456 - -
Aip03g04504 470 MobiDBLite consensus disorder prediction 269 283 - -
Aip03g04504 470 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04504 Aip-Chr3 129302961 129304906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04504 - - adu:107481599 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04504 03 129302961 129304906 Aip03g04504 03 129302961 129304906 ECH