Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04250 ATGTCTAGTGGATATACCGTAGAAGTTACCAGTCTATCGCCAAAAGCCACTGAGAAGGATGTGTACGACTTTTTCGCATTCTCTGGTGCAATTGAGTATGTCGAAATTGTCAGGTCTGGTGATTATGCTTGCACTGCATATGTGACATTCAAAGATGCTTATTCCCTAGAAACTGCTTGCTTGCTAAGTGGAGCCACGATTTTAGACCAAAGTGTATGCATTACTCGCTGGGGGCAGTATGAAGATGAGTTCGATCATTGGAACCGGCCATCCTATAACCATGACGACGATTCATCAACTACGCTACAAAGCCACCAATTTGTTTCCTCTGCCGGAGAAGTAGTTACAGTGACTCAAGAAGTCGTCAAGACCATGATAGCAAAAGGGTATGTCCTCAGCAAAGACGCATTAGCCAAGGCTAAGGAATTCGACGAGTCCCACGGGGTTTCAGCCACGGCAACAGCAAAGGTAGCCGAGCTGAGCCAGAGAATTGGCCTCACTGACAAGTTATCAGCTAGCTATGAGGCCGTTAGATCCGCCGATCAAAGGTATCATGTATCAGAAACAGCCAAGTCAGCTGCATTTGCCACGGGACGATCTGTGGCTGCAGCTGCGAACACTGTAGTTAATAGTAGCTATTTCTCTAAAGGTGCCTTCTGGGTTTCCGGTGCTTTAACCCGGGCAGCGCAGGTTGCTTCCGATTTAGGTAACCGTGGAGCTAAAAATTGA 729 0.4719 MSSGYTVEVTSLSPKATEKDVYDFFAFSGAIEYVEIVRSGDYACTAYVTFKDAYSLETACLLSGATILDQSVCITRWGQYEDEFDHWNRPSYNHDDDSSTTLQSHQFVSSAGEVVTVTQEVVKTMIAKGYVLSKDALAKAKEFDESHGVSATATAKVAELSQRIGLTDKLSASYEAVRSADQRYHVSETAKSAAFATGRSVAAAANTVVNSSYFSKGAFWVSGALTRAAQVASDLGNRGAKN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04250 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 68 IPR000504 GO:0003723
Aip03g04250 242 CDD RRM_Vip1_like 7 75 IPR034360 -
Aip03g04250 242 SMART rrm1_1 6 76 IPR000504 GO:0003723
Aip03g04250 242 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 241 - -
Aip03g04250 242 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Aip03g04250 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Aip03g04250 242 Gene3D - 1 82 IPR012677 -
Aip03g04250 242 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04250 Aip-Chr3 126715831 126718801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04250 - - gmx:100805907 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04250 03 126715831 126718801 Aip03g04250 03 126715831 126718801 ECH