Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04219 ATGAACGTTATTGAGAGTGTAACAAACATTGCAAAGCACCCAACAATCTCACTCATAAAACGAAGCACCAGCCTGAAAGAACTCAAACAAATTCACGCACAGTTACTCCTCAACGGCACACTCAACAACCCACACTTCCACGCCCAGTTCCTTGCCACCATTGCCCTCCACAACCCAATTAACCTCCCTTACACCACCACCACCCACCTCCTCCGCCACCCTCACAACCACCCCAACCTCTTCGCCCTCAACTCCATCATCAGGGCATATTCCAAGGGCCCCACACCACACTACAGTTTCCATTTCTATAACCACCACATCCTCCGCAACAACCTCTCCCCCGACAACTACACTTTCAACTTCATGATCCGCACGTGCGCACAGCTACTTGCTCATGACTCTAGCACGTGCCTTCATGCTGCTGTTATAAAACACGGCTTCGACAATGACCCGCACGTGCAAACCGGGTTGATATTCATGTACGCTGAATTGGGGTGTCTTGGCTCTTGCTATGGAGTTTTTAGACGTGTTTTGAGGCCTGATTTGGTTTGCCAAACTGCAATGCTTCATGCTTCTGCGAAACTTGGGGACGTTGACTTTGCACGGAAGATGTTTGATGAAATGCCTCGGAGAGATTACATTGCTTGGAACGCCATGATTGCAGGGTATGCGCAATGTGGGAGGTCGAGGGAGGCGTTGGAGTTGTTCCGGGCGATGCAAGTGGAGGGTGTGAGGCTCAATGAGGTGTCCATGGTTTTGGTGTTGAGTGCTTGCACCCAATTGGGGGCATTGGATCAGGGAAGATGGGCACATGCTTATGTTGAGAGGAGCAAGCTTAGGATCACGGTGTCGCTTGGGACTGCTCTTGTTGACATGTATGCGAAATGTGGAGACATTCATAAGGCCATGGAAGTGTTTTGGGAAATGAAGGAGAGGAATGTTTACACTTGGAGTAGTGCCATTGGTGGGTTAGCCATGAATGGACTTGGCCATGAGAGTCTTCATCTTTTCTCCATCATGAAAAAAGATGGCCTAGTTCAGCCAAATGAAGTTACCTTCATTTCAGTGTTACGAGGTTGCTCTGTGGTTGGATTGGTGGAGGAAGGGCGAAGACATTTGGAGTCGATGAGGTGTTTGTACGGAATTGAGCCTCAGCTTGAACATTATGGCTTGATGGTTGATTTGTACGGTCGATCAGGGCTACTCAATGAAGCTCTAGAATTCATCAATACCATGCCTATGAAGCCTCATGTAGGAGCGTGGAGTGCGTTGCTCCACGCTTGTAGGATGCACAGGAACAAGGAGATTGGTGAGCTTGCATTGAACAAGATTTTGGAACTGGAGTGCAAGAATGATGGTGCATATGTCCTTTTATCAAATATATATGCTGATTACAAGAATTGGGAAAGTGTTATTAGTTTGAGGCAGAAAATGAAGGCCAAAGGTGTGACTAAGCTACCTGGTTGTAGTGTCATAGAGGTTGATGGTGAGGCTCATGAGTTCATTGTTGGGGACAAGTCTCACCCCAGATATGATGAGATAGAATTGAAGGTAGAAGAGGTTTCTAGGTGTCTGAGAAATGCAGGGTATGTGACAAACACAAACTCTGTGCTTTTTGATATAGAAGAAGAGGAGAAAGAGGTTGCTGTGAGTAGGCATAGTGAGAGGTTAGCCATTGCATTTGGGTTGATTAGTTTGAAGGAAGGCATTCCAATTAGGGTGGTTATGAATCTTAGAATTTGTTGGGATTGCCATGAAGTAGCAAAAATGATATCCAAACTTTTTTATAGAGAAATTATTGTGAGGGACAGAAACAGGTTTCATCATTTTGAAGATGGTCAATGCTCTTGTAAGGGGTATTGGTGA 1866 0.4603 MNVIESVTNIAKHPTISLIKRSTSLKELKQIHAQLLLNGTLNNPHFHAQFLATIALHNPINLPYTTTTHLLRHPHNHPNLFALNSIIRAYSKGPTPHYSFHFYNHHILRNNLSPDNYTFNFMIRTCAQLLAHDSSTCLHAAVIKHGFDNDPHVQTGLIFMYAELGCLGSCYGVFRRVLRPDLVCQTAMLHASAKLGDVDFARKMFDEMPRRDYIAWNAMIAGYAQCGRSREALELFRAMQVEGVRLNEVSMVLVLSACTQLGALDQGRWAHAYVERSKLRITVSLGTALVDMYAKCGDIHKAMEVFWEMKERNVYTWSSAIGGLAMNGLGHESLHLFSIMKKDGLVQPNEVTFISVLRGCSVVGLVEEGRRHLESMRCLYGIEPQLEHYGLMVDLYGRSGLLNEALEFINTMPMKPHVGAWSALLHACRMHRNKEIGELALNKILELECKNDGAYVLLSNIYADYKNWESVISLRQKMKAKGVTKLPGCSVIEVDGEAHEFIVGDKSHPRYDEIELKVEEVSRCLRNAGYVTNTNSVLFDIEEEEKEVAVSRHSERLAIAFGLISLKEGIPIRVVMNLRICWDCHEVAKMISKLFYREIIVRDRNRFHHFEDGQCSCKGYW 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04219 621 Pfam DYW family of nucleic acid deaminases 529 621 IPR032867 GO:0008270
Aip03g04219 621 Pfam PPR repeat 315 345 IPR002885 -
Aip03g04219 621 Pfam PPR repeat 287 314 IPR002885 -
Aip03g04219 621 Pfam PPR repeat 388 413 IPR002885 -
Aip03g04219 621 Pfam E+ motif 499 523 IPR046849 -
Aip03g04219 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Aip03g04219 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Aip03g04219 621 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 20 595 - -
Aip03g04219 621 Pfam PPR repeat family 212 258 IPR002885 -
Aip03g04219 621 Gene3D Tetratricopeptide repeat domain 177 284 IPR011990 GO:0005515
Aip03g04219 621 Gene3D Tetratricopeptide repeat domain 288 499 IPR011990 GO:0005515
Aip03g04219 621 Gene3D Tetratricopeptide repeat domain 15 176 IPR011990 GO:0005515
Aip03g04219 621 TIGRFAM PPR: pentatricopeptide repeat domain 215 247 IPR002885 -
Aip03g04219 621 TIGRFAM PPR: pentatricopeptide repeat domain 287 314 IPR002885 -
Aip03g04219 621 TIGRFAM PPR: pentatricopeptide repeat domain 184 212 IPR002885 -
Aip03g04219 621 PANTHER OS01G0715700 PROTEIN 20 595 - -
Aip03g04219 621 Pfam E motif 431 493 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04219 Aip-Chr3 126358894 126360807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04219 99 621 Glycoside Hydrolase AT3G49170 36.911 1.22e-109 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04219 - - gmx:100795404 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04219 03 126358894 126360807 Aip03g04219 03 126358894 126360807 ECH