Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04201 ATGGCAACAACTCAAACTCCATTGCTTTTCTCCACCAACAACAATGGCCAACCCTTTATCCATAACAGCCACACGCGCCTCTTCCACTTGCTCAACCACTCCATTGTTGATATCTCTCACTTGAAGCAAATCCATGCTCAACTTCTACGTACCATTCACACCAACCATCATCCACAATCCCTCCTTCTACACAGCAGAATCCTTCACCATTCTTCTCTGCTTGATCTTGGATACGCCACTCGAATTTTTCATCACTTTCAGAATCCCAATTCCTTCATGTGGAACACACTCATAAGAGCCTATGCTAGAACCGCAGACCAAAAACACAAGTCCATGGAACTTTACAAAGCAATGTTAATGATGGAACGAGAACAACAAAGTGCAGCGGTTATTCCTGATAATTACACATACCCTTTTGTTTTAAAGGCATGTGCTTACTTGTTCTCTCTTTCTGAAGGGAAACAGACTTGGCACACAAGGTGTTCGAGAAAATGTCCGAAAGAAAGGATTCATGATCCTGACGGTTACACCATGCAAAGTGTGATTAGTTCCTGTGCTGGATTGGGTGCTTTGTCTTTGGGTTTGTGGGCTCATGCTTATGTCTTGAAAAGGAGTGACAAGAACATGATTGGTGATGTTTTGGTTAACACTAGCTTGGTGGATATGTATTGCAAGTGTGGCTCAGTGGGATTTGCAAAACAAGTCTTTGAAAGCATGCCTTATAGAGATGTGAATTCATGGAATTCAATGATTTTGGGGCTTGCCATGCATGGCATGGCTGAGGAGGCGTTGGACTACTATGCAAGAATGGTGAAGGTAAAGGGACTCATGCCGAATTCAATCACTTTTGTTGGTGTCTTGAGTGCATGTAATCACAGGGGCATGGTTAATGAAGGGATTATGTCTTTTGACATAATGACCAGGGAGTACAAAATTGAGCCAAGATTAGAGCATTACGGATGCCTCGTTGATCTTTTCGCTCGAGCCGGACGCATCGAAGAGGCTATGAACTTGGTTTCAGAAATGCCTATGAAACCGGATGTCGTGATCTGGAGGAGTCTGTTGGATGCTTGTTGCAAGCAACATGCAAGTCTTGAGCTAAGTGAAGAATTGGCCAAGAAAGTGTTTGAGTCAGAGGGAAGTACTACATATAGTAGTGGTGCTTATGTGCTATTGTCAAGAATCTATGCTTCAGCTAGCATGTGGAATGATGTTGGATTGCTTAGAAAACTAATGACTGATAAGGGTGTGAATAAAGAACCAGGTTGTAGTTTGGTAGAGATTGATGGTGTCACTCATGAATTTTTTGCTGGGGACACTAGTCATCCTCAAAGTGAAGATATATACAAGTTTATGAGTGAAATTGAGGAGAAGCTAGAAGCAACCGGGTATGTACCTGATTATTCAGGTGCACCTTTAGTTGATGAGGTTAATGAGGGAAAAAAGAATACTATGAGGTTGCATAGTGAGAGATTAGCTATAGCTTTTGGATTACTAAGGTCAAGACCAGGCATGCCAATAAGAGTGTTTAAGAATCTTAGAGTGTGTAATGATTGTCACAGTGTTACAAAATTACTATCAAGAATTTATAATGTAGAGATAATTGTGAGAGATCGTGCACGGTTCCATCATTTTAAAGAGGGAAACTGTTCTTGTAAGGATTATTGGTGA 1671 0.4135 MATTQTPLLFSTNNNGQPFIHNSHTRLFHLLNHSIVDISHLKQIHAQLLRTIHTNHHPQSLLLHSRILHHSSLLDLGYATRIFHHFQNPNSFMWNTLIRAYARTADQKHKSMELYKAMLMMEREQQSAAVIPDNYTYPFVLKACAYLFSLSEGKQTWHTRCSRKCPKERIHDPDGYTMQSVISSCAGLGALSLGLWAHAYVLKRSDKNMIGDVLVNTSLVDMYCKCGSVGFAKQVFESMPYRDVNSWNSMILGLAMHGMAEEALDYYARMVKVKGLMPNSITFVGVLSACNHRGMVNEGIMSFDIMTREYKIEPRLEHYGCLVDLFARAGRIEEAMNLVSEMPMKPDVVIWRSLLDACCKQHASLELSEELAKKVFESEGSTTYSSGAYVLLSRIYASASMWNDVGLLRKLMTDKGVNKEPGCSLVEIDGVTHEFFAGDTSHPQSEDIYKFMSEIEEKLEATGYVPDYSGAPLVDEVNEGKKNTMRLHSERLAIAFGLLRSRPGMPIRVFKNLRVCNDCHSVTKLLSRIYNVEIIVRDRARFHHFKEGNCSCKDYW 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04201 556 Pfam E motif 362 427 IPR046848 -
Aip03g04201 556 Pfam PPR repeat 318 343 IPR002885 -
Aip03g04201 556 Pfam PPR repeat 217 242 IPR002885 -
Aip03g04201 556 PANTHER OS01G0913400 PROTEIN-RELATED 26 156 - -
Aip03g04201 556 PANTHER OS01G0913400 PROTEIN-RELATED 169 497 - -
Aip03g04201 556 PANTHER BNAC04G18690D PROTEIN 26 156 - -
Aip03g04201 556 PANTHER BNAC04G18690D PROTEIN 169 497 - -
Aip03g04201 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 278 IPR002885 -
Aip03g04201 556 Pfam PPR repeat family 243 290 IPR002885 -
Aip03g04201 556 Gene3D Tetratricopeptide repeat domain 200 300 IPR011990 GO:0005515
Aip03g04201 556 Gene3D Tetratricopeptide repeat domain 36 192 IPR011990 GO:0005515
Aip03g04201 556 Pfam DYW family of nucleic acid deaminases 463 556 IPR032867 GO:0008270
Aip03g04201 556 Gene3D Tetratricopeptide repeat domain 301 378 IPR011990 GO:0005515
Aip03g04201 556 TIGRFAM PPR: pentatricopeptide repeat domain 319 342 IPR002885 -
Aip03g04201 556 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Aip03g04201 556 Pfam E+ motif 432 455 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04201 Aip-Chr3 126134406 126136253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04201 168 556 Glycoside Hydrolase AT3G49170 39.796 2.61e-96 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04201 - - zju:107428784 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04201 03 126134406 126136253 Aip03g04201 03 126134406 126136253 ECH