LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04145	ATGGCTCGGGTCTATATTGGGAATCTGGACCCTCGTGTGTCTGAGAGGGATCTCGAAGATGAATTTCGTTTATTTGGTGTTCTTCGGAGTGTCTGGGTTGCTCGTAGACCGCCCGGATATGCATTCATCGAGTTTGATGATAGGAGGGATGCACTTGACGCAATTCATGCCTTGGATGGGAAAAATGGGTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGAGGAGGCCGTGGTGGGCGTGGGCGTGGAAGTGATGACCTTAAATGTTATGAATGTGGTGAACCTGGACATTTTGCAAGAGAGTGTCGCTTGCGCGTTGGTTCACGTGGCCTGGGTAGTGGAAGGAGGCGAAGTCCAAGTCCTTATTATAGGCGTCGCAGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTGTTAGTCCTCGTGGGAGAAGATCTCCAAAGAGACGTAGCATATCACCTCCTTATCGGGGTCGCAGCTACAGCAGGTCCCCTCCATACCGACATGCCCGCCGTGATTCACCTTATGCCAATGGAGATTGA	540	0.513	MARVYIGNLDPRVSERDLEDEFRLFGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGRGGRGRGSDDLKCYECGEPGHFARECRLRVGSRGLGSGRRRSPSPYYRRRRSPSYGYGRRSVSPRGRRSPKRRSISPPYRGRSYSRSPPYRHARRDSPYANGD	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04145	179	Gene3D	-	75	150	-	-
	Aip03g04145	179	MobiDBLite	consensus disorder prediction	165	179	-	-
	Aip03g04145	179	Gene3D	-	2	69	IPR012677	-
	Aip03g04145	179	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	2	177	-	-
	Aip03g04145	179	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	177	-	-
	Aip03g04145	179	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Aip03g04145	179	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Aip03g04145	179	SUPERFAMILY	RNA-binding domain, RBD	3	81	IPR035979	GO:0003676
	Aip03g04145	179	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Aip03g04145	179	Pfam	Zinc knuckle	88	103	IPR001878	GO:0003676\|GO:0008270
	Aip03g04145	179	MobiDBLite	consensus disorder prediction	109	179	-	-
	Aip03g04145	179	CDD	RRM_SRSF3_like	3	71	-	-
	Aip03g04145	179	SUPERFAMILY	Retrovirus zinc finger-like domains	69	106	IPR036875	GO:0003676\|GO:0008270
	Aip03g04145	179	SMART	c2hcfinal6	88	104	IPR001878	GO:0003676\|GO:0008270
	Aip03g04145	179	ProSiteProfiles	Zinc finger CCHC-type profile.	88	103	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04145	Aip-Chr3	125313234	125316384	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g04145	K12896		-	rcu:8262005	212.616

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g04145	03	125313234	125316384	Aip03g04145	03	125313234	125316384	ECH