Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04144 ATGGCTTCGGAAGTGAAGAGGCAAAGAGACCACGAAGAAGAAGAAGAAGAAGAAGAGAACGCTGTCTCTGTCTCCGATGGAATTGGAATATCATCCCTCATTCAAGGCTGGTTCTCCGAAATTAGTCCAATGTGGCCTGGAGAAGCACACTCATTGAAAGTGGAAAAAGTTTTGTTTCAAGGCAAGTCTGAATACCAGAATGTCATGGTGTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGAGTCATACAGCTCACTGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTCCCTCTTTGCTCTATTCCAAATCCTAAAAAGGTCTTGGTTATTGGTGGAGGAGATGGAGGGGTCTTGAGAGAAGTATCACGCCATTCATCAGTTGAAAAGATAGACATTTGCGAAATTGACAAGATGGTTGTTGATGTCTCCAAGCAATTCTTCCCTGATGTAGCCATAGGTTTTGATGATCCCCGTGTGTCACTTCATATTGGGGATGGAGTTGCATTCTTGAAGGAAGCTCCAGAAGGAACTTATGATGCAGTTATAGTTGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTCGAGTTGGTTGCAAAGGCTCTTCGGCCAGGAGGAGTTGTAAGTACTCAGGCAGAAAGTATATGGCTTCATATGGACATAATTGAGGGCATTGTCACCAATTGTAGCCAGACTTTCAAAGGCTCCGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGCGGAATAATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTGGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTTTCAGAAGTCAGTAAGACCAATGAAATTTTACAACTCTGAGATTCATACAGCATCTTTCTGTTTGCCATCTTTTGCTAGGAGGAAGCTTGTTTCCAAAGCAAAATGA 978 0.4284 MASEVKRQRDHEEEEEEEENAVSVSDGIGISSLIQGWFSEISPMWPGEAHSLKVEKVLFQGKSEYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAIGFDDPRVSLHIGDGVAFLKEAPEGTYDAVIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMDIIEGIVTNCSQTFKGSVNYAWTTVPTYPSGIIGFMLCSTEGPPVDFKHPVNPIDEKEFQKSVRPMKFYNSEIHTASFCLPSFARRKLVSKAK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04144 325 Gene3D Vaccinia Virus protein VP39 88 325 IPR029063 -
Aip03g04144 325 Hamap Polyamine aminopropyltransferase [speE]. 36 321 IPR001045 GO:0003824
Aip03g04144 325 Pfam Spermidine synthase tetramerisation domain 36 90 IPR035246 -
Aip03g04144 325 Gene3D Spermidine synthase, tetramerisation domain 29 87 IPR037163 -
Aip03g04144 325 PANTHER SPERMIDINE/SPERMINE SYNTHASE 16 324 IPR001045 GO:0003824
Aip03g04144 325 TIGRFAM speE: spermidine synthase 37 315 IPR001045 GO:0003824
Aip03g04144 325 PANTHER SPERMIDINE SYNTHASE-RELATED 16 324 - -
Aip03g04144 325 PIRSF Spermidine_synth 26 325 IPR030668 GO:0006595
Aip03g04144 325 CDD AdoMet_MTases 113 221 - -
Aip03g04144 325 MobiDBLite consensus disorder prediction 1 24 - -
Aip03g04144 325 Pfam Spermine/spermidine synthase domain 93 280 - -
Aip03g04144 325 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 35 272 IPR030374 -
Aip03g04144 325 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 114 127 IPR030373 -
Aip03g04144 325 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 319 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04144 Aip-Chr3 125310396 125313030 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04144 K00797 - gmx:100776863 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04144 03 125310396 125313030 Aip03g04144 03 125310396 125313030 ECH