Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04142 ATGCTTTTGGGGCCTCCAATGTCAAGCTCCTTGCTAATGGGACCATGGCCACTCTGGCTCTCGACAAACTCTCAGGCTCCGGATTGGTGTCCAAAAGCAGTTACTACTATGGATTCTTCAGTGCTGCAATCAAATTACCAGCTGTTGTCTAATGCAGATAAATTCCCTCATAACCATGATGAGATTGATATCGAACTCCTTGGGCATGACAAGAGGAACGATTGGGTTATCCAAACAAATGTGTATGCCAATGGAAGCGTGAGCACTGGAAGAGAAGAAAAGTTCTACTTCTGGTTCGACCCAACAAAGCAGTACCATTACTATAGCATCTTGTGGAACAGTTATCATACAGTGTTCCTAGTGGACAACATTCCAGTGAGGGAATTCATACACGGGACTGTTTTCCCATCAAAACCGATGTCGGTGTATGCAACAATATGGGATGGTTCAGAATGGGCCACACATGGTGGAAAATACCCAGTTGATTATAAGTATGCACCATTTGTTGTTTCATTCTCAGAGATGCAACTCACTGGCTGCACTTCTGATCCATTAGCATGCTCTAAATCCACCCCTTCTTCTGGTGTAGACCCTGTTAATGGACCTCAATTTACCAAGCTATCCCCACAACAGCTGGCAGCACTTGATTGGGCTAGAAAGAAGCTCATGTTTTACTCCTATTGTACTGACAAGAACAGATATAAAGTCATGCCACCAGAATGCCACTAA 729 0.4403 MLLGPPMSSSLLMGPWPLWLSTNSQAPDWCPKAVTTMDSSVLQSNYQLLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNVYANGSVSTGREEKFYFWFDPTKQYHYYSILWNSYHTVFLVDNIPVREFIHGTVFPSKPMSVYATIWDGSEWATHGGKYPVDYKYAPFVVSFSEMQLTGCTSDPLACSKSTPSSGVDPVNGPQFTKLSPQQLAALDWARKKLMFYSYCTDKNRYKVMPPECH 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04142 242 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 49 242 IPR044791 GO:0004553
Aip03g04142 242 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 205 241 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip03g04142 242 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 49 242 - -
Aip03g04142 242 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 241 IPR013320 -
Aip03g04142 242 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 172 IPR000757 GO:0004553|GO:0005975
Aip03g04142 242 PIRSF EndGlu_transf 32 242 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g04142 242 Gene3D - 28 241 - -
Aip03g04142 242 Pfam Glycosyl hydrolases family 16 50 164 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04142 Aip-Chr3 125289217 125291435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04142 49 242 Glycoside Hydrolase AT1G10550 63.902 1.07e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04142 K08235 - gmx:100778993 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04142 03 125289217 125291435 Aip03g04142 03 125289217 125291435 ECH