Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04140 ATGCCTCCATATGGAACTATGGTTCGTCCTGTATATCCTCCTCGAGTACCTGGAGCGGTTAATGTTCTCCCGGTATCACGTCCCCCTGTTGCAGGGGTACCTCCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTGCTCCTAGTGTTACTCCAGCTGAGAAGCCACAAATCACGGTTTATGTTGGCAAGATTGCACCTACTGTGGAAAATGATTTCATGCTTTCTATTCTTCAGTTATGTGGACCAGTTAAGAGCTGGAAACGTCCTCAGGATTTATCGAATGGAACGCCTAAAAGCTTTGGCTTTTGTGAGTTTGAGACTGATGAAGGGGTTCTTCGTGCCTTGCGTTTGCTTACTAAATTAAATATTGATGGGCAAGAGCTAATGCTGAACATCAATGAAACTACGAAAGAACATCTGAAGCGGTATGTTGCGAAAAAAACTGAAGATTCAAAGAAAAAAGAAACCCAGGTAGCAGGTGCTGAAAAAGATGATGAAGGTGCACAACCTTCTGATGGTGGTGGGAAATCTGATGCCGAGGACTTAAAGAAAGAGGATAGTGATTCACATAACAAGGAATCCCTTGATTTTGCTACCTTCGGCATTGTCACTGATGATGATAGGGAAGCTGATCGAGAGGCTTTGGAAAAGATTACGAACATGATAGAGGAGAGGTTGAAAACAAGACCTTTGCCTCCACCGCCTGCACAGACGCCTGGTGATGGCTCTGCAATAACTTCAGAACAACCAGCTAAAACAAGAGATGGAGATTCTGATGAGGCTATGGGGAGGAATGAAGGAAATGAAGATAAAACTGAAAAAGATGCAAACAGTGACATCAAACAAACTAGTGAACATGATAAGCCTGAGACCCCTGATAGAAGGCATGACAGGAGAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGGGAAAAGGACAGGGAGCTTGAAAGATATGAACGAGAAGCAGAGAGGGAACGTATTAGGAAAGAAAGGGAACAAAGAAGGAGGATTGAGGATGCTGAGCGTCAGTATGAATCATGTTTGAAAGAGTGGGAGTATCGAGAAAGGGAGAAAGAGAAAGAGCGCCAGTATGAAAAGGACAAGGAAAAAGAAAGAGAACGCAAACGGAGAAAGGAGATACTATATGATGAAGAAGATGAGGACGACGATTCAAGGAAGCGGTGGCGTAGAAGTGTATTAGAGGAGAAGAGAAAGAAGAGATTGCGTGAAAAGGAAGACGACTTGGTTGACAGACAAAGAGAAGAGGAAGAAATTGCCGAGGCCAAGAAGAAGGCAGAGGAGGATCAGCAACGGCAACAGCAGAGAGATGCACTGAAACTGTTATCTGACCATTCTATAAATGGCGGTGAAAAAGCCATGGCTACTGAAGAGGCTGCCAATGAAGTAAAAAATGTTGTTACAGAACACAATAATGCAGTTGATTATAATCATGAAGGCCATATAGGTGATGTCAATTCACTAAACGCTATGAATGATGAATCAGCCATGGCATCTGTCTCAGAAAATGATGCACGATCAAGTGCAAATGCTCCTGCAAAGAAGTTGGGATTTGGTCTAGTTGGGTCCGGAAAAAGAACAACTGTCCCTTCTGTTTTCCACGAGGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCTTTGGTTCCAATTGATTATTCAACTGAGGAACTGCAAGCTGTTCAACCTACTTCCGCTGGGCCAACACCTCCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTGCTAATCTCAAAGAAGAGAAGCTTGATGGAGAACGAGATAGAAGTAAGCGTTCAAGTGAGAAGTCTAATCACCGAGACAGGGACAGGAGTGATGAAGATGGCACCCACAACAGAGATGACCACAAGGAGAAAACTGACCGTGACAGAGATCGAGATCATGGATTGGACAAAGTAAAGACCTCGGATAACAAGAGACTCTTGGATGCAAAACAGTTAATTGATATGATTCCAAAGACCAAGGAGGAACTGTTCTCGTATGAGATAAACTGGGCAGTGTATGACAAGCATCAGTTGCACGATAGAATGAGACCGTGGATTTCAAAGAAGATCAAAGAGTTTTTGGGGGAAGAAGAAAATACATTGATAGATTACATTGTTTCCAGTACGCAAGAACATGTGAAAGCATCCCAGATGCTAGAACGTCTTCAAATAATTTTAGATGAAGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACGGGGCTTGCTTTGAGGACGAAATGA 2328 0.433 MPPYGTMVRPVYPPRVPGAVNVLPVSRPPVAGVPPVRPIIPPVVRPVVAPSVTPAEKPQITVYVGKIAPTVENDFMLSILQLCGPVKSWKRPQDLSNGTPKSFGFCEFETDEGVLRALRLLTKLNIDGQELMLNINETTKEHLKRYVAKKTEDSKKKETQVAGAEKDDEGAQPSDGGGKSDAEDLKKEDSDSHNKESLDFATFGIVTDDDREADREALEKITNMIEERLKTRPLPPPPAQTPGDGSAITSEQPAKTRDGDSDEAMGRNEGNEDKTEKDANSDIKQTSEHDKPETPDRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEDAERQYESCLKEWEYREREKEKERQYEKDKEKERERKRRKEILYDEEDEDDDSRKRWRRSVLEEKRKKRLREKEDDLVDRQREEEEIAEAKKKAEEDQQRQQQRDALKLLSDHSINGGEKAMATEEAANEVKNVVTEHNNAVDYNHEGHIGDVNSLNAMNDESAMASVSENDARSSANAPAKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTSAGPTPPNLAAAAEFAKRISSANLKEEKLDGERDRSKRSSEKSNHRDRDRSDEDGTHNRDDHKEKTDRDRDRDHGLDKVKTSDNKRLLDAKQLIDMIPKTKEELFSYEINWAVYDKHQLHDRMRPWISKKIKEFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRTK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04140 775 Gene3D PWI domain 655 771 - -
Aip03g04140 775 MobiDBLite consensus disorder prediction 149 195 - -
Aip03g04140 775 Coils Coil 306 355 - -
Aip03g04140 775 SMART pwi_2 692 765 IPR002483 GO:0006397
Aip03g04140 775 Coils Coil 359 379 - -
Aip03g04140 775 ProSiteProfiles PWI domain profile. 679 775 IPR002483 GO:0006397
Aip03g04140 775 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Aip03g04140 775 Pfam PWI domain 699 762 IPR002483 GO:0006397
Aip03g04140 775 SUPERFAMILY RNA-binding domain, RBD 34 140 IPR035979 GO:0003676
Aip03g04140 775 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 2 775 - -
Aip03g04140 775 Coils Coil 416 447 - -
Aip03g04140 775 SUPERFAMILY PWI domain 697 763 IPR036483 GO:0006397
Aip03g04140 775 MobiDBLite consensus disorder prediction 359 398 - -
Aip03g04140 775 MobiDBLite consensus disorder prediction 413 451 - -
Aip03g04140 775 SMART rrm1_1 61 134 IPR000504 GO:0003723
Aip03g04140 775 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Aip03g04140 775 Gene3D - 54 169 IPR012677 -
Aip03g04140 775 MobiDBLite consensus disorder prediction 413 450 - -
Aip03g04140 775 MobiDBLite consensus disorder prediction 599 655 - -
Aip03g04140 775 CDD RRM_RBM25 61 143 IPR034268 -
Aip03g04140 775 MobiDBLite consensus disorder prediction 255 344 - -
Aip03g04140 775 MobiDBLite consensus disorder prediction 220 344 - -
Aip03g04140 775 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 2 775 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04140 K12822 - gmx:100809428 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04140 03 125265935 125271831 Aip03g04140 03 125265935 125271831 ECH