Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04121 ATGATAGGTGGCTTTAGCTTAAAGAGCTTCACATACATTTTTCTAATTGCAATTCTTATTTGGTGTTCAAATTTTGAGTCATGCATTGCAAGGAGAGGGAGGCATTGGAGGCATAACAATAATAGAGCTTTCTCTTCTTCTCTTATGAAGAAAAAAGTGAAGAATTATGGTAATCATAATAATAATGGTGGAGGCTCAAATTCAAAACCAAAACCAAAGTCACCATCATCATCATCATCATCACCAAAGTCTACTCCACCACCATATAAAATCACTCCTTCATTACCACCACGAATTCCTAACCCAGATTACCCTCCAAGTCCTCCAACAAAAGGTTACAACAAGGGTGGCTCTTCTTCTACCACATTCAATGTGCTAGATTTTGGAGCTAAGGGTGATGGAAATTGTGATGATACCAAGGCATTCGAAGCTGCGTGGGCAGCAGCATGTAAGGTAGAGGCATCAACCATGGTGGTACCAGCAGATTACACCTTCTACGTGGGGCCCATCTCATTCTCGGGCCCATACTGCAAGCCCAGCATCGTTTTTCAGCTTGATGGCACCATTGTTGCTCCAACAAACTCCAAAGTTTGGGGTGGAGGAATGTTCCAGTGGCTGGAATTCTCAAAGCTAGTGGGAATCACCATTCAAGGAAATGGTGTCATTGATGGAAGAGGCTCGGTTTGGTGGAAAGACCAACCATATGATGACCCTATAGATGATGAAGAAAAGCTCATAGTCCCATTGAACCACACAATTGGGAAGCCACCACCAATGCCAGTTGAAAGTGAGCTTGGAGTAAAGATGCCAGGCATCAAGCCAACTGCATTAAGGTTCTACGGGAGTTTTTACCCAACTGTCACAGGCATAACTATTCAGAATAGTCCACAATGCCATCTCAAGTTTGACAGCTGCAATGGAGTCCTGGTCCATGATGTGACCATATCATCGCCGGGCGACAGCCCCAACACAGATGGAATTCACCTTCAGAACTCTAAAGATGTTCTCATCCATAGCAGCAACCTTGGATGTGGAGATGATTGTATTTCCATACAAACTGGGTGCTCAAATGTATATGTACACAATGTCAATTGTGGACCAGGACATGGAATCAGCATTGGGGGCCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGTTCTGTGCAAGGAGTACAATTCTCAAACATTCAAGTTTCCGAAGTTCAGCTCCCTATTGTGATCGATCAATTCTACTGCGATAAAAGATCCTGCTCGAACCAAACAGCCGCTGTGGCGCTAGCAGGAATCAATTATGAAGAGATAAAGGGAACATACACAGTTAAGCCAGTACACTTTGCATGTAGTGATAGCCTGCCTTGCGTTGATGTTTCTTTGACCTCAATCGAGTTAAAACCAGTTCAAGAACAATACCACCTGTATGATCCATTCTGCTGGCAAACTTATGGTGAATTAAAAACTCCGACACTGCCACCAATTTCTTGCCTTCAGATTGGGAAGCCGCCGAACAATCGGATTCAGACAGATCATGATTTATGTTGA 1617 0.4354 MIGGFSLKSFTYIFLIAILIWCSNFESCIARRGRHWRHNNNRAFSSSLMKKKVKNYGNHNNNGGGSNSKPKPKSPSSSSSSPKSTPPPYKITPSLPPRIPNPDYPPSPPTKGYNKGGSSSTTFNVLDFGAKGDGNCDDTKAFEAAWAAACKVEASTMVVPADYTFYVGPISFSGPYCKPSIVFQLDGTIVAPTNSKVWGGGMFQWLEFSKLVGITIQGNGVIDGRGSVWWKDQPYDDPIDDEEKLIVPLNHTIGKPPPMPVESELGVKMPGIKPTALRFYGSFYPTVTGITIQNSPQCHLKFDSCNGVLVHDVTISSPGDSPNTDGIHLQNSKDVLIHSSNLGCGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVQFSNIQVSEVQLPIVIDQFYCDKRSCSNQTAAVALAGINYEEIKGTYTVKPVHFACSDSLPCVDVSLTSIELKPVQEQYHLYDPFCWQTYGELKTPTLPPISCLQIGKPPNNRIQTDHDLC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04121 538 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 7 528 - -
Aip03g04121 538 SUPERFAMILY Pectin lyase-like 120 536 IPR011050 -
Aip03g04121 538 MobiDBLite consensus disorder prediction 54 85 - -
Aip03g04121 538 MobiDBLite consensus disorder prediction 54 117 - -
Aip03g04121 538 SMART pbh1 211 232 IPR006626 -
Aip03g04121 538 SMART pbh1 332 353 IPR006626 -
Aip03g04121 538 SMART pbh1 385 406 IPR006626 -
Aip03g04121 538 SMART pbh1 355 375 IPR006626 -
Aip03g04121 538 SMART pbh1 305 331 IPR006626 -
Aip03g04121 538 SMART pbh1 414 435 IPR006626 -
Aip03g04121 538 Gene3D - 113 523 IPR012334 -
Aip03g04121 538 PANTHER - 7 528 - -
Aip03g04121 538 Pfam Glycosyl hydrolases family 28 152 234 IPR000743 GO:0004650|GO:0005975
Aip03g04121 538 Pfam Glycosyl hydrolases family 28 273 490 IPR000743 GO:0004650|GO:0005975
Aip03g04121 538 MobiDBLite consensus disorder prediction 86 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04121 Aip-Chr3 125000240 125005343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04121 5 538 Glycoside Hydrolase AT1G60590 65.234 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04121 - - gmx:732602 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04121 03 125000240 125005343 Aip03g04121 03 125000240 125005343 ECH