Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04120 ATGGGTTTGCTTGGAATAACGGAAACCCCAACCACGTTCACATCTGTTATATCTCTCTGTGCTAATCATGGGTTCTTCGGAGAAGGCCTTCAGGTTCATTGCAAGGTTGTCAAGTTTGGTTTCTTGTCGAACGTGTTCGTTGGTGGCGCCCTTGTTGGGTTCTATATGAATTTGGGGTTATGTGGGGCTGCACTGGAGCTGTTTGACGAATTGCCAGAGAGAAATTTAGCTCTGTGGAATGTGGTGCTGCGCGGGTTGTGTGAATTGGGTTGTGTTGATGAGTTGGTTGGGTTTTATTACTCTTGGATGTGTGTTATGCAATTCTGGGGGAAGAGGCCATCTGTGCGTTCTATGGTGGGGTTTTTGAATTTGTGTAGTAGAAATAAAGATGTTGTATTGGGGAAGCAGGTTCACTGTTGTGTTTTGAAATTGGGTCTTGATGAAATGAGTGTGCATGTTCAATCTGCATTGATTGATATGTATGGAAAATGTAGTGATCTTGAGAGTTCTGTAGCTGTGTTTGAATGTCTCCCTGAGAGAACTTTGGAGTGTTGCAATTCGTTGATGACTTCCCTTTCTTACTGCGGTGCAATTGAAGATGTGGTGGAGTTGTTTTATTTGATGATTGATGAAGGTATTAGGCCAGATGAAGTAACCTTCTCTTCAACGCTGAAGGCATTGTCGGTCTCTGCTTCAGCTAGCTTCACGATAACTCAGTTATTGCATTGCTTTGCATTAAAATACGGACTCGAAGGAGATGCTGCAGTGGCATGCTCCCTAATGGATGCATATTCAAGATGTGGCCATGTGGAACATTCTTGTGAGATCTTTGAGGGTCTTAGTTCTCCAAATGCTATTTGTTTCACATCTATGATCAATGGATATGCCCGAAATGGAATGGGGGAAGAAGGACTTGCAGTGCTTCAGGCTATGATTGAGAAGGGCCTAAAACCAGATAAAGTTACCTTTTTATGTGCATTAACAGGATGCAATCATAAAGGGCTAGTTGAGGAGGGCAAAATAGTTTTTGACTCCATGAAATCTCTTCATGGGATTCACCCCAATCGCCAGCACTTTTCATGCATTGTAGATCTTTTATGCCGTGCTGGGCTCCTATATGAAGCTGAAGACTTGCTGCTACTCTCACCAGAAAAAAGCGATTGTGTTATGTGGAGCTCGTTGCTGCGAAGTTGCAGGGTCCATGGGAATGAAGAGGTTGGAACAAGAGCAGCGCAGGCTTTAGTCGAGCTAGGCTCCAATAACCCTGCAGTGTTGTTGCAAGCTTCAAATTTCTATGCTGAGATTGGGAAGTCTGATGCCTCAAGAGAAATCAGAGAGGTTGCTCTAGCAAGGAAGATGATAAGGGAGATTGGACATACGGCTCATGGAGTCACAGGAACCCTGACATGTGACAACATTGCCATGCTTGATGAACTTGCAAATATGGATACAGAAGAAAATGAGATAGAGCTCTCTGACATTCCTTCATGGACAAGTGAGCGTGGTGGAAAGGTTCTTGTGAATGTTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTCCGAAAAGCATGGAATGTTTCTTGCTCTACACCAAATTCTGTGTTCTTAGTTCCCCAAGGACGCCGCTACCTTGTCAATGCAACAAAATTCATAGGGCCTTGTAAAGGCACTCTAATCATCCAGATTGATGGAACAATAGTAGCACCAGATGAGCCTAAGAACTGGGATTCAAAATTAGCACGCGTTTGGCTTGATTTTTCAAAATTGGAGAAAGCTGTTTTCCAAGGTGCTGGAGTTATTGATGGCTCAGGCAAAAAATGGTGGGAAGCATCTTGCAAGAAGAACAAGTCTAATCCTTGCAAAGGTGCACCAACAGCATTGACCATTGATTCAAGCTCAGGTATAAAGGTGAAAGGACTAACTATACAGCATAGCCAACAGATTCATTTTACCATATCAAGGTGTAATTCTGTTAGGATTTATGGTGTCAAAGTGTCATCACCAGATGACAGCCCAAACACCGACGGAATTCATATTAGTGAATCAACTAATGTCATAATCCAAGACAGCAAAATTGGAGCAGGGGATGATTGCATATCAATTGTGAATGCCAGTTCCAATATCAAAATGAAAAGAATTTTTTGTGGACCAGGACATGGAATTAGCATTGGGAGCCTTGGGAAAGACAATTCAACTGGCATAGTGACAAAAGTGATTTTAGATACAGCAGTTATTAAGGATACTACAAATGGTGTCAGGATTAAGACTTGGCAGGGGGGTTCTGGGTATGTTCGTGGAGTACGCTTTCAGAATGTGAAGATGGAAAATGCCTCAAACCCCATTATTATTGATCAATTTTACTGTGATTCACCAACTACTTGTCAAAACCAGACATCAGCCGTGGAGATAAGCGAGATCATGTATCAGAACATTAGTGGGACAACAAGGAGTGCTAAGGCCATTCAATTTGCATGCAGTGACACAGTTCCATGCAGCAGCTTGGTTCTTAGCAATGTGGACTTGGAGAAGCAAGACGGCACTGTCGAAACTTACTGTCACTCCGCTCAAGGCTTCGGCTATGGTGTTGTGCACCCTTCTGCCGATTGCCTCAATTCCAGCGACAACACTTCGGAAGTTATTACAGAACCAATCACAGTCGAAGAGGAGGAGGATACTCATCACACTGAACTATAA 2712 0.4318 MGLLGITETPTTFTSVISLCANHGFFGEGLQVHCKVVKFGFLSNVFVGGALVGFYMNLGLCGAALELFDELPERNLALWNVVLRGLCELGCVDELVGFYYSWMCVMQFWGKRPSVRSMVGFLNLCSRNKDVVLGKQVHCCVLKLGLDEMSVHVQSALIDMYGKCSDLESSVAVFECLPERTLECCNSLMTSLSYCGAIEDVVELFYLMIDEGIRPDEVTFSSTLKALSVSASASFTITQLLHCFALKYGLEGDAAVACSLMDAYSRCGHVEHSCEIFEGLSSPNAICFTSMINGYARNGMGEEGLAVLQAMIEKGLKPDKVTFLCALTGCNHKGLVEEGKIVFDSMKSLHGIHPNRQHFSCIVDLLCRAGLLYEAEDLLLLSPEKSDCVMWSSLLRSCRVHGNEEVGTRAAQALVELGSNNPAVLLQASNFYAEIGKSDASREIREVALARKMIREIGHTAHGVTGTLTCDNIAMLDELANMDTEENEIELSDIPSWTSERGGKVLVNVDSFGAAGDGESDDTEAFRKAWNVSCSTPNSVFLVPQGRRYLVNATKFIGPCKGTLIIQIDGTIVAPDEPKNWDSKLARVWLDFSKLEKAVFQGAGVIDGSGKKWWEASCKKNKSNPCKGAPTALTIDSSSGIKVKGLTIQHSQQIHFTISRCNSVRIYGVKVSSPDDSPNTDGIHISESTNVIIQDSKIGAGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGIVTKVILDTAVIKDTTNGVRIKTWQGGSGYVRGVRFQNVKMENASNPIIIDQFYCDSPTTCQNQTSAVEISEIMYQNISGTTRSAKAIQFACSDTVPCSSLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLNSSDNTSEVITEPITVEEEEDTHHTEL 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04120 903 ProSitePatterns Polygalacturonase active site. 718 731 IPR000743 GO:0004650|GO:0005975
Aip03g04120 903 SMART pbh1 688 709 IPR006626 -
Aip03g04120 903 SMART pbh1 741 762 IPR006626 -
Aip03g04120 903 SMART pbh1 661 687 IPR006626 -
Aip03g04120 903 SMART pbh1 711 731 IPR006626 -
Aip03g04120 903 SMART pbh1 770 791 IPR006626 -
Aip03g04120 903 Gene3D - 497 902 IPR012334 -
Aip03g04120 903 PANTHER BNAA08G20470D PROTEIN 477 886 - -
Aip03g04120 903 Gene3D Tetratricopeptide repeat domain 235 306 IPR011990 GO:0005515
Aip03g04120 903 PANTHER - 477 886 - -
Aip03g04120 903 Pfam Glycosyl hydrolases family 28 539 858 IPR000743 GO:0004650|GO:0005975
Aip03g04120 903 Pfam PPR repeat family 283 330 IPR002885 -
Aip03g04120 903 Gene3D Tetratricopeptide repeat domain 1 103 IPR011990 GO:0005515
Aip03g04120 903 Gene3D Tetratricopeptide repeat domain 307 496 IPR011990 GO:0005515
Aip03g04120 903 Pfam PPR repeat 184 213 IPR002885 -
Aip03g04120 903 Pfam PPR repeat 12 41 IPR002885 -
Aip03g04120 903 Pfam PPR repeat 359 379 IPR002885 -
Aip03g04120 903 Pfam PPR repeat 259 278 IPR002885 -
Aip03g04120 903 SUPERFAMILY Pectin lyase-like 505 877 IPR011050 -
Aip03g04120 903 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Aip03g04120 903 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Aip03g04120 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Aip03g04120 903 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Aip03g04120 903 Gene3D Tetratricopeptide repeat domain 104 234 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04120 Aip-Chr3 124980753 124986976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04120 472 903 Glycoside Hydrolase AT1G23460 70.575 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04120 - - pvu:PHAVU_003G061700g 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04120 03 124980753 124986976 Aip03g04120 03 124980753 124986976 ECH