Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03959 ATGGCTCTACATTGTTGTCTTCTGCTTCTTCTTCTTCTTCAAATCTCTCTACTTGCAGCTGATGAAGCATTCATTGGAGTGAACATTGGAACATCTCTCTCAGACATGCCTCATCCAACACAAGTAGTAGCACTTCTTAAATCACAGCAAATTCACCATGTTCGGTTGTATGATGCTGACCAAGCCATGCTCATTGCACTTGCAAAGACAGGAATTGAAGTTTCTGTCTCTGTCCCCAATGAAGAACTCTTAGCAATTGCCCAATCAAATTCCACAGCTGCCAATTGGGTTTACCGAAATGTTGTAGCACATTATCCATCCACTAACATAACATCCATTTGTGTTGGTTCTGAGGTTTTAACCACACTTCCTAACGTTGCAAAAATCCTAGTCAATGCCCTTAAGTACATTCATTCAGCTCTTGTCGCTTCGAATCTGGATCGCCAGATCAAAGTTTCCACACCCCTTTCGTCTTCCATGATCCTGGATTCGTTCCCTCCTTCCCAAGCCTTCTTTAACCGCTCCCTGAATCCTATCTTGATTCCAATGCTTGATTTCTTGCAATCAACAGGCTCCTATCTAATGCTCAACATTTACCCGTACTATGATTACATGGAATCTAATGGGGTGATTCCATTGGACTATGCACTTTTCAAGCCTCTGCCTCCCAACAAAGAAGCCATAGATTCCAACACACTTGTACACTACACCAATGTGTTTGATGCTGTGGTGGACGCAGCATATTTCGCCATGTCCTTTCTAAACTTCACCAATATCCCGGTGGTGGTGACGGAGACAGGATGGCCTTCCAAGGGCGACCGGAACGAGCCGGACGCAACATTAGACAATGCAAATGGATATAACAGCAATCTCATCAAACATGTTTTAAACATGACAGGAACTCCCAAGCATCCGGGGATAGCCATTAGTACTTACATCTATGAGCTCTACAATGAGGACACAAAAGCAGGGCCATTGTCTGAAAAGAACTGGGGATTGTTTGATGCAAATGGAAAACCTATTTACATATTGCATCTCACAGGGTCAGGAGCAGTTTTGGCTAATGATACTACAAATCAAACTTACTGCGTCGCCAAGGATGATGCTGATCCCAAGATGCTGCAGGCTGGAATAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCTCCATTGCTTCAGGGCCAACCCTGCTATGAACCGGACAATGTGGTTGCACATGCTAACTATGCTTTTGATACTTACTACCATTTGATGGGAAGGTCTTCTGAAGCCTGTAACTTCAATCAAATGGCCACAATTTCTACCTCCAATCCAAGTCACGGTTCTTGTGTATTTCCGGGAAGTCTCGGCAAAAATGGAACCTTTGGTAATGTGACAGCAGCATCAATGAACTCAACAAGTTTAGATTCTTCTGCTAACAATGTTCATAGAAACCTTGTATTGGTGATAGGAGTAGTAACATGGGGAGTGGTTTTGCTATGA 1485 0.4364 MALHCCLLLLLLLQISLLAADEAFIGVNIGTSLSDMPHPTQVVALLKSQQIHHVRLYDADQAMLIALAKTGIEVSVSVPNEELLAIAQSNSTAANWVYRNVVAHYPSTNITSICVGSEVLTTLPNVAKILVNALKYIHSALVASNLDRQIKVSTPLSSSMILDSFPPSQAFFNRSLNPILIPMLDFLQSTGSYLMLNIYPYYDYMESNGVIPLDYALFKPLPPNKEAIDSNTLVHYTNVFDAVVDAAYFAMSFLNFTNIPVVVTETGWPSKGDRNEPDATLDNANGYNSNLIKHVLNMTGTPKHPGIAISTYIYELYNEDTKAGPLSEKNWGLFDANGKPIYILHLTGSGAVLANDTTNQTYCVAKDDADPKMLQAGIDWACGPGKVDCSPLLQGQPCYEPDNVVAHANYAFDTYYHLMGRSSEACNFNQMATISTSNPSHGSCVFPGSLGKNGTFGNVTAASMNSTSLDSSANNVHRNLVLVIGVVTWGVVLL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03959 494 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Aip03g03959 494 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 8 482 - -
Aip03g03959 494 Gene3D Glycosidases 24 350 - -
Aip03g03959 494 Gene3D - 355 447 - -
Aip03g03959 494 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Aip03g03959 494 Pfam X8 domain 362 433 IPR012946 -
Aip03g03959 494 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Aip03g03959 494 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 482 IPR044965 GO:0004553|GO:0005975
Aip03g03959 494 SMART X8_cls 361 446 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03959 Aip-Chr3 122745222 122748266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03959 20 468 Glycoside Hydrolase AT1G66250 73.673 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03959 K19891 - gmx:100799965 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03959 03 122745222 122748266 Aip03g03959 03 122745222 122748266 ECH