Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03498 ATGCCGTGCCAGGACTCGGAGCTGAAGGCGGCGAAGACTGCGTACCGGAGCGCCAAGGCTGAGGGTAACCACCGCGAGGAGGCGCGTTGGGCCAACGTCATTGGCGACATTCACAAGAACAGAGGAGAGTACGTGGAAGCCCTCAAATGGCTCCGAATCGATTACGATGTTTCGCTAAAATACTTGCTGGAAAAGGATTTGCTCCCTACCTGCCAATCCATCGGCGAGATGTACCTCCGCCTCGAGCAGTTCTCTGAAGCTCTAACTTACCAGAAGAAGCACTTGGAGCTTGCAAGAGAAGCTGACGATGTGGTTGAGCAGCAAAGAGCGAGCACGCAGCTAGGTCGAACATACCACGAGCTGTTCTCGAGATCCGATCACGACCACAACTCGATTCGCAACGCGAAGAAGTATTTCAACTTTGCAATGGAGCTTGCAGTGGCTCTGAAGAAGAAACCGCCAAGCAGCAAGTCTTCGTTCCTGAAGGAGTATATCGATGCGCACAACAACAAAGGGATGCTGGAAATGGAGCTCGATAACTTGCAGGAAGCGAAGGAGATATTAACTCGAGGGTTGGAAATTTGTGATGAGGAGGAGGTTAGTGAATTTGATGATGGGAGGAGCAGGCTCCACCATAACCTTGGGAATGTGTACATGGAACTCAGGAATTGGAATGAAGCTAGGTGGAATATCAAAATGGACATTCAGATTTGTAACAAGATTGGCCACCGTCAAGGGGAAGCGAAAGGGTATATCAATCTTGGGGAATTGCATTCCAGGACTCAGAAGTATGAGGAGGCAATCTCTTTTTATAACAAGGCACTTGGTTTGGCAAGGTCCTTGGAGGATGAGGATGCTTTGGTGAGGCAAATTGAGCAGAATATTAGGACTGTAAAGGAAGCTGTCAAAGTGATGGATGAGATAAAGAAGGAAGAGCAGAACCTCAAGAAGCTTAAAAGAGATATCGCCGTTGCCAGAGGGACACCTAATGAGCGGAAATGCCTGCTCCAGCAGAATGGCTCTCTTGAACGCCTTGTGGAGAAGTCAAGAATGATATCTGCATGGGAGAAGCATTGCGAATTTGCAAAGGAGAAGAAGAGAATAGCAAGTGAACTTTGTGACAAGCAAAGGCTTGGTGATTCATATATGGATGTTGGAGAATCATATCAGAAGCTTAGAAAATTCAACAAAGCAATCAAAAGGTACAAGAAGAGTTGGGAAATGTACCAAACAATTGGCAGTTTAGAGGGTCAAGCATTGGTAAAAATCAATATTGGCAATGTTTTGGATTCTGCTCAAAAGTGGAGAGAAGCATTAGATGCATATACTGAAAGCTATAGGATTGCTGTTGAAGCTCAACTTCCTGATATACAGCTTTCTGCATTAGAAAATATGCATTATAGTAACATGATAAGATTTGATGATGAATCCGAGACAAAGAGGTTGAAAATTTTAATTGATAAGCTGAAGAACTCAATAGAAGCTGAGTCAGGTGCTAAAAATATGGCAGAAGATTGTTGCTCTGAGACTGATACTGAGGCAGACAATAATCTGTCAATAGCTGGGTCTGATGACCTTTGCTCTCCACATACCAGTTCTAGATCAAAAGCTCTATCTACTGGAGAAGAATTTATAGATGACATGCCACTTATGTCAATCTATCAGTCCTTAAAAGGCTCATCCAGAAAGACAACAGGTCACATGGAAGATCTTACCAGCACCAAGCAAGCTGATAAGTCATCCAAAAGTCTTACAAATTTAACCGGTAATCATCAGGCAGTTGTTGGACGTAAACGTGTCCGTGTAATTCTGTCTGATGATGAAGAGGAGATGGAGTGTTCAAGCAAACGGAGTCATGATTGCGTGTTAGAAGACAGGTCTACTTATGATGCAAATATGAGTAAAGTGAGTCCTAGTAACATTAAGGTTATCTCAGAGAATGGATCCAAACTTCCAATTAATGTTGAAGAAAGTAGCAGTTCTTTCAAATGCTGGAGTCCACATACACTTGCTAAAACTTGCAGACATTCCAGATCCATGAGCAATGACCTAGTTGCTGAACTTGATCTTCCTAGTGGTTCTAAATGCAACACAGATGCCTCTGGTAAACCAAGTGATGCTGCCCCTCCTGCGTCAAATAGTTCTCAATACGATAAATATATTGAGTGCCAGATTGGGAATGATCTAATTCACATAGAAGCAACCTGGTGTACTGCCAGTGATAAGCTGGATATTGAATCTTTGAAAGCTGTAGCTGCATGCTTATACTATCTACAACTTCCTACACAAAAGAGATCAGATGGTCTGTTGCCTGTTGTTCAGCACATTTTATGTGCTGGAAGAGATCTAGAATCCCTAGAAACTGTTGAAAACCTTCAGATATGCAATGTCACAATTGAAGCGTCCATTGATGGATGGATTCATAAGCGCCTCATAAAAATGTATGTAGACTTTTGCAAGCAGCTGTCAGAGAAGCCAAATATGAAGGTACTGAAGAAACTCTACAATCTAGAGGTTTCGGATGATGAAATAGTAGTGTCTGAGTGTGACCTGCAAGATTTGTCTATAACTCCATTGATAAATGCATTGCAGTCCCAAAAAGCATTTTCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGGACAATGGAAGCACTTCAGAAGGTCTTCACAGCATCAGACCAACATTATGGTGACTTAACACTTGATTTGCATTGTAATCGATTTGGTCCAACCGCTCTGCTGCAGATTTGTGAATGCTCAGTGCTGTTTGATAGACTGGAAGTGCTCAACATTTCTGGAAATCGTCTTACTGATGCATGTGGATCTTATCTTTCAACTATCTTGAAAAAATGTAAAGCCCTCTATAGCTTGAATGTAGAGAACTGCTGTATCACATCCAGAACTATTCAAAAGATTGCTGATGCACTGGACTCTACATCCGTACTTGCTTATCTCTGTATAGGACATAACAGCCCGGTATCTGGAAATACTATAGTTAATCTTTTGTCCAAGCTTTCCACTTTGAAAAGGTTTTCGGAGCTGAATCTCAGTGGTCTAAAACTAGGCAAACCAGTAGTTGATGCCCTTTGCCAGCTTGCAGGTACCTTGAGTTTATCAGGACTAATTCTTGGAGGTACCAGTATCGGAACAGAAGGGGTAATGCAATTAGCAGAACCATTGCTGAAAGGGGCTGAAGAGTTTGTGAAACTTGATCTATCATATTGTGGGCTCACATCAAACTTTGTTTCAAATATCAATGTTAATTTGTTTTGTTCCATCCTTGAGCTGAACCTGGAAGGAAATCCTGTTCTGCCTGAGGGCGGAAATACTCTATGTTCTCTTCTAGTAAACCCATCATGCTCTCTCAAAGTGTTGGTCCTTAGAAAGTGTCAACTTGGGCTCGCTGGGGTTCTCCACATAATTGAGGCACTGGCAGAGAACAACAGCCTGGAGGAGCTTAATCTTGCTGATAATACTGTACCAAATGAACTTTATGCTCTAAAATCCGACTTAACAGTAAAAGGTGACTCTGAAAAACACGATCAGATACTTGATACGATTAAGTTGGCGGGTAATCAAGAGGTCCATTGCTCTGTAAACTTGGACTACCATCAGCTTGAAGTTGCTGATAGTGAAGATGAAACAGTTAAAGCAGCTGCTTCTGGAATAGATGACAGTGCCAGTTCGTGTCAAAGAAATTCTTCATCTGCGGAGTGCCTTTTAACTCAACAACTTGCAGTGGCTATTGGCAAGGCAAAGAAATTGCAATTACTAGACCTTAGCAACAATGCTTTTTCATTGGAAGCTGCAGAAACTTTCTATAATTCCTGGACAAGTGTACGGGTGCCAAGTCAGAAGCACATTAATGAGGGGATTATGCATTTCTCAACAAAAGAAAAGAAGTGCTGCAGAGTGAAACCGTGCTGCAAAAAAGTCCTGCCTTTATAG 3954 0.4236 MPCQDSELKAAKTAYRSAKAEGNHREEARWANVIGDIHKNRGEYVEALKWLRIDYDVSLKYLLEKDLLPTCQSIGEMYLRLEQFSEALTYQKKHLELAREADDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFNFAMELAVALKKKPPSSKSSFLKEYIDAHNNKGMLEMELDNLQEAKEILTRGLEICDEEEVSEFDDGRSRLHHNLGNVYMELRNWNEARWNIKMDIQICNKIGHRQGEAKGYINLGELHSRTQKYEEAISFYNKALGLARSLEDEDALVRQIEQNIRTVKEAVKVMDEIKKEEQNLKKLKRDIAVARGTPNERKCLLQQNGSLERLVEKSRMISAWEKHCEFAKEKKRIASELCDKQRLGDSYMDVGESYQKLRKFNKAIKRYKKSWEMYQTIGSLEGQALVKINIGNVLDSAQKWREALDAYTESYRIAVEAQLPDIQLSALENMHYSNMIRFDDESETKRLKILIDKLKNSIEAESGAKNMAEDCCSETDTEADNNLSIAGSDDLCSPHTSSRSKALSTGEEFIDDMPLMSIYQSLKGSSRKTTGHMEDLTSTKQADKSSKSLTNLTGNHQAVVGRKRVRVILSDDEEEMECSSKRSHDCVLEDRSTYDANMSKVSPSNIKVISENGSKLPINVEESSSSFKCWSPHTLAKTCRHSRSMSNDLVAELDLPSGSKCNTDASGKPSDAAPPASNSSQYDKYIECQIGNDLIHIEATWCTASDKLDIESLKAVAACLYYLQLPTQKRSDGLLPVVQHILCAGRDLESLETVENLQICNVTIEASIDGWIHKRLIKMYVDFCKQLSEKPNMKVLKKLYNLEVSDDEIVVSECDLQDLSITPLINALQSQKAFSMLDLSHNLLGNGTMEALQKVFTASDQHYGDLTLDLHCNRFGPTALLQICECSVLFDRLEVLNISGNRLTDACGSYLSTILKKCKALYSLNVENCCITSRTIQKIADALDSTSVLAYLCIGHNSPVSGNTIVNLLSKLSTLKRFSELNLSGLKLGKPVVDALCQLAGTLSLSGLILGGTSIGTEGVMQLAEPLLKGAEEFVKLDLSYCGLTSNFVSNINVNLFCSILELNLEGNPVLPEGGNTLCSLLVNPSCSLKVLVLRKCQLGLAGVLHIIEALAENNSLEELNLADNTVPNELYALKSDLTVKGDSEKHDQILDTIKLAGNQEVHCSVNLDYHQLEVADSEDETVKAAASGIDDSASSCQRNSSSAECLLTQQLAVAIGKAKKLQLLDLSNNAFSLEAAETFYNSWTSVRVPSQKHINEGIMHFSTKEKKCCRVKPCCKKVLPL 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03498 1317 ProSiteProfiles TPR repeat region circular profile. 248 275 - -
Aip03g03498 1317 SMART tpr_5 165 198 IPR019734 GO:0005515
Aip03g03498 1317 SMART tpr_5 419 452 IPR019734 GO:0005515
Aip03g03498 1317 SMART tpr_5 68 101 IPR019734 GO:0005515
Aip03g03498 1317 SMART tpr_5 379 412 IPR019734 GO:0005515
Aip03g03498 1317 SMART tpr_5 248 281 IPR019734 GO:0005515
Aip03g03498 1317 SMART tpr_5 208 241 IPR019734 GO:0005515
Aip03g03498 1317 Pfam Tetratricopeptide repeat 208 279 - -
Aip03g03498 1317 Coils Coil 178 198 - -
Aip03g03498 1317 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Aip03g03498 1317 SUPERFAMILY TPR-like 149 284 IPR011990 GO:0005515
Aip03g03498 1317 MobiDBLite consensus disorder prediction 520 540 - -
Aip03g03498 1317 SUPERFAMILY TPR-like 374 454 IPR011990 GO:0005515
Aip03g03498 1317 SUPERFAMILY RNI-like 836 1279 - -
Aip03g03498 1317 Gene3D Tetratricopeptide repeat domain 321 472 IPR011990 GO:0005515
Aip03g03498 1317 MobiDBLite consensus disorder prediction 559 584 - -
Aip03g03498 1317 SMART LRR_RI_2 1121 1148 - -
Aip03g03498 1317 SMART LRR_RI_2 1254 1281 - -
Aip03g03498 1317 SMART LRR_RI_2 866 893 - -
Aip03g03498 1317 SMART LRR_RI_2 953 980 - -
Aip03g03498 1317 SMART LRR_RI_2 1037 1064 - -
Aip03g03498 1317 SMART LRR_RI_2 1092 1119 - -
Aip03g03498 1317 SMART LRR_RI_2 1149 1175 - -
Aip03g03498 1317 SMART LRR_RI_2 925 952 - -
Aip03g03498 1317 Gene3D Tetratricopeptide repeat domain 2 313 IPR011990 GO:0005515
Aip03g03498 1317 Coils Coil 281 328 - -
Aip03g03498 1317 MobiDBLite consensus disorder prediction 520 539 - -
Aip03g03498 1317 Gene3D Ribonuclease Inhibitor 818 1284 IPR032675 -
Aip03g03498 1317 SUPERFAMILY TPR-like 14 199 IPR011990 GO:0005515
Aip03g03498 1317 PANTHER PROTEIN TONSOKU 1 1313 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Aip03g03498 1317 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03498 Aip-Chr3 114697783 114706000 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03498 - - aprc:113856161 1934.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03498 03 114697783 114706000 Aip03g03498 03 114697783 114706000 ECH