Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03450 ATGTCCATAAGCATCCACAATCTTCCTCGCTCTTCTGGTATTCTGAGAATCAGAGTTTCTGGAAATAGATTATTCCGCAAGAATGGAAATAAGTGTTCGGGAGCGGGATCTATATCGTGTTCGGCTGGCGCTAGGAATGATGATTTTCTTCCTTCCATTAATCAATTAAGCGATGCACGCCTCATTTATTCCGTTGCTTCATCCATGGGCCATAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCAATTGTCGATGCCCTACAAGAAATGCACCTCACTTCAAAGTTTCGTGGCTCTGAGGTAATTGAACTTCAAAATTTCGAGCCAGCTTCAGTAGATGACATTGCAAGTGTGCATGCAAGAGCTTATGTTTCTGGCCTTGAAAAGGCTATGGATCAAGCATCCGAGAAGGGTCTAATTTTCATTGATAGTTCTGGACCAACCTATGCTACTGCTACTACCTACCGGGAGTCAATTGTTGCTGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGCTTCAAAGATAAGTAGAGATCCACCTACTGGTTTTGCTTTGATAAGACCACCGGGACACCATGCTGTTCCACAAGGACCAATGGGCTTCTGTGTTTTTGGAAATGTGGCCATTGCAGCTCGTTATGCCCAGCGTGTTCATGGACTAAAGCGCGTCTTCATAATTGACTTTGATGTTCACCATGGAAATGGAACAAATGATGCTTTCTATGATGATCCAGATATATTTTTCCTTTCAATTCATCAAGATGGAAGCTACCCAGGTACTGGTAAATTTGACGAAGTTGGCAGCGGAGCTGGTGAAGGAACCACTCTAAATTTGCCTCTTCCTGGAGGATCAGGTGATACTACTATGAGAACAGTGTTTGATGAAGTCATTGTACCTTGTGCTCAAAGATTTAAGCCAGATATAATCCTTGTTTCTGCTGGATATGACGGGCACGTATTGGATCCACTAGCCAACCTTCAATACACAACTGGAACATATTACACGCTTGCTTCCAACATTAAACAACTATCAAAAGAGTTATGTGGAGGCAGATGCGTGTTCTTCTTAGAAGGAGGATACAACTTAAAGTCTCTTTCATACTCAGTGGCAGACACATTCCGTGCTCTTCTCGGTGACCCAAGCTTGGCATCGGAGTTTGATGACCCCAATATTTTATATGAAGAGCCATCAACAAAGGTTAAGCAAGCTATTCAGAGGATTAAATCCATTCATTCCCTGTGA 1260 0.4302 MSISIHNLPRSSGILRIRVSGNRLFRKNGNKCSGAGSISCSAGARNDDFLPSINQLSDARLIYSVASSMGHNQESHPESHFRVPAIVDALQEMHLTSKFRGSEVIELQNFEPASVDDIASVHARAYVSGLEKAMDQASEKGLIFIDSSGPTYATATTYRESIVAAGAGLALVDSVVAASKISRDPPTGFALIRPPGHHAVPQGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSIHQDGSYPGTGKFDEVGSGAGEGTTLNLPLPGGSGDTTMRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYTLASNIKQLSKELCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDPSLASEFDDPNILYEEPSTKVKQAIQRIKSIHSL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03450 419 CDD HDAC_classII 76 383 - -
Aip03g03450 419 Pfam Histone deacetylase domain 76 381 IPR023801 -
Aip03g03450 419 Gene3D Histone deacetylase domain 51 418 IPR037138 -
Aip03g03450 419 SUPERFAMILY Arginase/deacetylase 71 387 IPR023696 -
Aip03g03450 419 PRINTS Histone deacetylase superfamily signature 194 217 IPR000286 -
Aip03g03450 419 PRINTS Histone deacetylase superfamily signature 228 243 IPR000286 -
Aip03g03450 419 PRINTS Histone deacetylase superfamily signature 312 322 IPR000286 -
Aip03g03450 419 PANTHER HISTONE DEACETYLASE 32 418 - -
Aip03g03450 419 PANTHER HISTONE DEACETYLASE 14 32 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03450 Aip-Chr3 112901789 112905838 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03450 - - gmx:100788664 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03450 03 112901789 112905838 Aip03g03450 03 112901789 112905838 ECH