Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03164 ATGCATGAGTACAACCTTACTCCGCACTCCTTGTATGCCGCGGTTTCAGTAGGTCCGGAAACAGAAACAATCATAAATGTTTTGACCAAGTTGTCCAAGACCAAGCTTCCCAAAGAGATGATTAAGTTTATACATGATTCCACTGCAAATTATGGCAAAGTGAAGCCGGTGCTTAAGAAGAACAGCTACTTTGTTGAATCTCCTGTTCCTGAGGTCTTGAAGACATTGCTCAGGGATAAAACTATATCTAGAGCAAGGATTGTTTCTGAGGTGCGTGATCGGATTTTCTTTCTGTTTAATATATTTGGCAAAGCAGCAGGTGAAATTGAAGGCACTCACGATGAGTTGTTCGATGAAGCAGAAGTAGCAGCTGTAGCTGAAGATAAAGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTGAATCCAGACATTGACATGGAACTAAAGCCTCAAGCACAACCTCGACCACATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGACATAAATTTTGCTCTCACTGAGTATGCCATGAAACTCCACAAGCCTATGATATATACTGCTACTAGCCATGTCGAGCGGACAAAAATTCTTCAAGCCTTCAAAACTAGCAAAGACGTCAACACTATTTTCCTTTCCAAGGTGGGTGACAACTCTATTGATATCCCTGAAGCAAATTTAATAATTCAAATCCCTTCTCATGCCGGTTCAAGGCGTCAAGAAGCCCAATGTTTAGGGGGTATATTCTCAGGGCAAAGGGAAAACCTCAAGATAGGATGGCAGGTGGTAAAGAGGAGTATGACGCATTTTTTTATTCGCTTGTGTCAACAGATACCCAGGAGATTATACTTGACAACTATGAGTAAGGTGTACGATGCTGAAGTACACTTGGATGAAATTAAGCTTCCTTGTGGTGTATTGTTATCTGCTATCATCTGTGAAAGGTACCAGACCACAGAGGGTGATCTTGAAGGAGAAGAATCAGACGAAAAGTGGATAGAGAAAGAGAACAGAGAAAACAGAGAAGAGAAGGGATCTCATTGA 1050 0.4105 MHEYNLTPHSLYAAVSVGPETETIINVLTKLSKTKLPKEMIKFIHDSTANYGKVKPVLKKNSYFVESPVPEVLKTLLRDKTISRARIVSEVRDRIFFLFNIFGKAAGEIEGTHDELFDEAEVAAVAEDKEAHSFEIDPSQVNPDIDMELKPQAQPRPHQEKSLSKMFGNDINFALTEYAMKLHKPMIYTATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANLIIQIPSHAGSRRQEAQCLGGIFSGQRENLKIGWQVVKRSMTHFFIRLCQQIPRRLYLTTMSKVYDAEVHLDEIKLPCGVLLSAIICERYQTTEGDLEGEESDEKWIEKENRENREEKGSH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03164 349 MobiDBLite consensus disorder prediction 324 349 - -
Aip03g03164 349 Pfam Helicase conserved C-terminal domain 1 87 IPR032830 -
Aip03g03164 349 MobiDBLite consensus disorder prediction 330 349 - -
Aip03g03164 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 248 IPR027417 -
Aip03g03164 349 Pfam ERCC3/RAD25/XPB C-terminal helicase 169 258 IPR032438 -
Aip03g03164 349 PANTHER DNA REPAIR HELICASE XPB1-LIKE 1 170 - -
Aip03g03164 349 PANTHER DNA REPAIR HELICASE XPB1-LIKE 170 257 - -
Aip03g03164 349 Gene3D - 166 256 IPR027417 -
Aip03g03164 349 PANTHER RAD25/XP-B DNA REPAIR HELICASE 1 170 - -
Aip03g03164 349 PANTHER RAD25/XP-B DNA REPAIR HELICASE 170 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03164 Aip-Chr3 102015265 102019130 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03164 K10843 - gmx:100818501 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03164 03 102015265 102019130 Aip03g03164 03 102015265 102019130 ECH