Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03025 ATGTCAATTACCGAGTATGCTTTGAGTTCAATTCCCAAGGAGCCGGTCAATTGGGAAAGCCAACTGGGACATGTCCCTGTGGATCCAATTGTTATATATCTCACGGTGGATGGTGTTGTCACCCCAATCCGAGTCTTGGAGTCTGATTCCATCGCTTCCGTCAAGATGAGGATTCAGACCTGCAAAGGCTTTGTGGTCAAGAACCAGAAGCTTGTCTACAGTGGCAGAGAGCTTTCGCGCAACGATACACTTATCAAGGATTATGGGGTCACTGATGGTAATGTTCTTCATTTGGTTCTTCGCCTCTCCGATCTTCTCTTCATCGTTGTCAAAACCGTTAGTGGCAAAGAATTTCGATTCCATATTGATGGGCATAGAAATGTTGGATACCTTAAGCAACGAATAAAAAGCAAAGGGGAAGAAGGTTTGGTCGATTTTGATGATCAAGATATTTTTTGCAATAATGAGAAGCTTGATGATCAGAGACTCTTTCATGAGTTATGCAAAAATGATGGCAATGTTATTCATTTGATAATAAAAAAATCAGCTAAGATTAGGACTACACCAGTTTGCAAAGATTTAAAACTTTTGGTTGAGGCAGGTGAATTCAAACAAGCGGAAGAGCAGACAATTGAGGTGCCAAAGATACCAGCTGGTGTTAGTTTTTGGCTAGAACCAGTTATTGTGAATCCAAAGATGGATCTTTTTCCTTACCTATGGGATTTGATCAACACGACATACGAAGGTTTGAAGAGAGGAAATAGCCCTATTAGGTCCTTGGAGGGAACAGGAGGTACTTACTTGATGCAAGATTCAACAGGACACCAATATGTTTCGGTATTCAAGCCCATGGATGAGGAGCCAATGGCTGTCAACAACCCAAGAGGGCTACCTTGTTCATCCAATAATGAAGGCCTCAAAAGAGGGACAAAGGTAGGGGAAGGAGCTTTGAGGGAAGTTGCAGCTTACATATTGGATCATCCAAGGAAAGGGTCTCGCCTTATGACAGGCGAAGCCATAGGCTTTGCCGGTGTTCCCCCTACCGTTATTGTTCAATGCTTGCATAAAGAATTTCACCATCCAAATGGGTTTGCTTGCTCATTGAAGCATGTCAAGATTGGATCCTTACAGAAGTTCATGACTAATGATGGCAACTGTGAGGACATTGGACCAAGGGCCTTTCCTGTGGAGGAGGTGCATAAAATTACTGTGCTCGACATAAGGTTGGCCAATACAGATAGACATGCTGGAAATATCTTGATCAGAAAAGAAGCTGATGGTCAAATGAAGCTCATTCCTATTGATCATGGCTACTGTCTACCAGCCAAATTTGAAGATTGCACATTTGATTGGCTTTATTGGCCGCAAGCACGTCAGCCTTACTCTCCTGATGCAATTGAATATATAAACTCTTTGGATGCAGAAAAAGATATAGAGCTTTTGAAATATTATGGATGGGATATGCCGATTGAATATGCCAGAACACTTCGGATTTCCACAATGTTGCTTAAGAAAGGTGTTCAAAGAGGTCTTACTCCCTTCGATATTGGAAGCATTATGTGCCGAGAAAATCTGAACAAGGAATCTGTAATTGAGGAGATCATTCGCCAAGCTCAGGATTCCTTGCTTCCTGGCATGGATGAATCCGCATTTCTTAAAACTATATCTGAGATCATGGATTCCCGCCTTGAAAAGCTTGCAAACCACTAG 1710 0.4216 MSITEYALSSIPKEPVNWESQLGHVPVDPIVIYLTVDGVVTPIRVLESDSIASVKMRIQTCKGFVVKNQKLVYSGRELSRNDTLIKDYGVTDGNVLHLVLRLSDLLFIVVKTVSGKEFRFHIDGHRNVGYLKQRIKSKGEEGLVDFDDQDIFCNNEKLDDQRLFHELCKNDGNVIHLIIKKSAKIRTTPVCKDLKLLVEAGEFKQAEEQTIEVPKIPAGVSFWLEPVIVNPKMDLFPYLWDLINTTYEGLKRGNSPIRSLEGTGGTYLMQDSTGHQYVSVFKPMDEEPMAVNNPRGLPCSSNNEGLKRGTKVGEGALREVAAYILDHPRKGSRLMTGEAIGFAGVPPTVIVQCLHKEFHHPNGFACSLKHVKIGSLQKFMTNDGNCEDIGPRAFPVEEVHKITVLDIRLANTDRHAGNILIRKEADGQMKLIPIDHGYCLPAKFEDCTFDWLYWPQARQPYSPDAIEYINSLDAEKDIELLKYYGWDMPIEYARTLRISTMLLKKGVQRGLTPFDIGSIMCRENLNKESVIEEIIRQAQDSLLPGMDESAFLKTISEIMDSRLEKLANH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03025 569 CDD Ubl_ubiquitin_like 108 178 - -
Aip03g03025 569 SUPERFAMILY Ubiquitin-like 102 181 IPR029071 -
Aip03g03025 569 Gene3D - 13 104 - -
Aip03g03025 569 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Aip03g03025 569 Pfam Phosphatidylinositol 3- and 4-kinase 262 515 IPR000403 -
Aip03g03025 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 567 IPR044571 -
Aip03g03025 569 SMART ubq_7 106 180 IPR000626 GO:0005515
Aip03g03025 569 SMART ubq_7 29 101 IPR000626 GO:0005515
Aip03g03025 569 ProSiteProfiles Ubiquitin domain profile. 106 184 IPR000626 GO:0005515
Aip03g03025 569 Gene3D - 107 193 - -
Aip03g03025 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 567 - -
Aip03g03025 569 SUPERFAMILY Ubiquitin-like 35 103 IPR029071 -
Aip03g03025 569 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 550 IPR000403 -
Aip03g03025 569 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Aip03g03025 569 SUPERFAMILY Protein kinase-like (PK-like) 409 565 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03025 Aip-Chr3 91324195 91326461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03025 1 567 Acyl Lipid Metabolism Gene Families AT5G24240 57.565 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03025 - - gmx:100809172 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03025 03 91324195 91326461 Aip03g03025 03 91324195 91326461 ECH
Aip03g03025 03 91324195 91326461 Aip02g00344 02 4578667 4581538 ECH
Aip05g01152 05 16775374 16778373 Aip03g03025 03 91324195 91326461 PCT