Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03024 AGGCTTATTGGGCATCATAAACAGGAAGAAGACCCAGCAGCAGTTCTTGCTGCCCAAACCTGCTGTATGTGTGAGCCTGCCTTGTGTGTGTATATTTATATATCATCGTTATATATTAGCATCTATTATTAGTCTAACATGGTTAGTTATTGCAGTTGATCTTTGTGATATTGAAGCACTGTATGAGCTGTTCAAGAAATTAAGTAGCTCCATAGTTGATGACGGCCTCATCAGCAAAGAGGAATTTCAACTTGGCTTATTTGGTAACAGCAAGAAAAGAAACCTTTTTGCCGATAGGATATTTGATTTATTTGATTCGGGAAAGGATGGGGTGATAGAGTTTGGAGAGTTTGTTAGAGGACTCAGCGTGTTCCATCCTGCAGCGCTCCAACCACAAAAAGCAGCTTTTGCATTTCGGCTCCACGATATACGGCAAAGTGGCTTTATTGAACGCGACGAGGTAAGAGAGATGATTGTGGCACTACTAAGCGAGTCCCAATTGGTGTTTTCTGATGACATAATTCAGCTCATAATCGATAAGGCTTTTCAAGAAGCAGATCTCAAAGGAGATGGTAAAATTGATCCAGACGAGTGGCAACAATTTGTGGCTCGAAATCCATCTTTATTGAGGAATATGACAATTCCACATTTGAAGGACCTTAATAAGGAGTTTCGTAATTTTGAATCAAtcttcgtcttctccaatctcgatgttgtcgccatcgtcttctggactcgcagccgtcatcgtcgtcttctccagcctcggcgtcgtcaccGTTATCTTCTGAACTCAACATTTCATGGTGCTTTCTCTCGCTTCTACAGCGACAAAGGTAGGATTCTCAACGAAGAGGAGCATGCCAAAAGAGAATGTCTGCATCAAGAAATGGGAGAGAGAGAGAGGTCGGAGAAACAGAAACAGCAAGCTGAGAAGGAAAAAGCAGAAATGGACAAAAACGCTTCTGACAAGATGAGCTTGAAGTATTGTGACCTGAATTTAAACTCCTTGGGAACAAATTGA 1024 0.3701 GLLGIINRKKTQQQFLLPKPAVCVSLPCVCIFIYHRYILASIISLTWLVIAVDLCDIEALYELFKKLSSSIVDDGLISKEEFQLGLFGNSKKRNLFADRIFDLFDSGKDGVIEFGEFVRGLSVFHPAALQPQKAAFAFRLHDIRQSGFIERDEVREMIVALLSESQLVFSDDIIQLIIDKAFQEADLKGDGKIDPDEWQQFVARNPSLLRNMTIPHLKDLNKEFRNFESIFVFSNLDVVAIVFWTRSRHRRLLQPRRRHRYLLNSTFHGAFSRFYSDKGRILNEEEHAKRECLHQEMGERERSEKQKQQAEKEKAEMDKNASDKMSLKYCDLNLNSLGTN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03024 340 CDD EFh 133 203 IPR002048 GO:0005509
Aip03g03024 340 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Aip03g03024 340 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Aip03g03024 340 SUPERFAMILY EF-hand 56 218 IPR011992 -
Aip03g03024 340 SMART efh_1 177 205 IPR002048 GO:0005509
Aip03g03024 340 SMART efh_1 133 161 IPR002048 GO:0005509
Aip03g03024 340 SMART efh_1 96 124 IPR002048 GO:0005509
Aip03g03024 340 Gene3D - 51 233 - -
Aip03g03024 340 PANTHER CALCINEURIN B-LIKE PROTEIN 5 51 228 - -
Aip03g03024 340 PRINTS Recoverin family signature 147 165 - -
Aip03g03024 340 PRINTS Recoverin family signature 100 121 - -
Aip03g03024 340 PRINTS Recoverin family signature 193 213 - -
Aip03g03024 340 Coils Coil 293 320 - -
Aip03g03024 340 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Aip03g03024 340 PANTHER CALCINEURIN B 51 228 IPR045198 GO:0005509|GO:0019722|GO:0019900
Aip03g03024 340 MobiDBLite consensus disorder prediction 293 322 - -
Aip03g03024 340 Pfam EF hand 178 202 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03024 Aip-Chr3 91159192 91163622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03024 52 229 EF-hand Containing Proteins AT5G24270 65.169 1.86e-82 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03024 K06268 - vra:106766823 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03024 03 91159192 91163622 Aip03g03024 03 91159192 91163622 ECH