Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03002 ATGGGAGGAGGTCGGTGGGTGATGACCGATCTATCTGCTAACTTGGCAGAAAAGTTGCGGTTTAAAGGAAAGATGAAAAACCCGGTATTTTCACGATGGGGGAAGAACAAGCAAACATTGCCTTCTCTATGGGGCTTGCGCCCGTATTTGGGTTGTTTGAGTTTCATGGGGGAGGTAAACACTGCCGCCGTCGTCTGCGCTGCGGAGCTTCCTTCCTTGTCTCGTCTTTGCTATCAAGATCTCGTTCCGCAGCGCAAACTGTCACCAGCCGCACCTTATTCATACAGATCGGCGGCCGTTGTCGTCATCCGCGGTACTGACTCGGTTGTCGTGCTCTGGATCTTCCGGCATCGTTTGCGCGAGACGAGGGGATCGCCGGTATTCGTGACGCTGCCGGTGAATACAGTGGGCCCTGAGGGGAAGATATCGAGGCCGAGGGCCATGATGTTCTCGCTGAAGGCGCTCGCCGCCGCGGGCGTGGAGGGCGTTGTGGTTGAGTTTTGGTGGGGAATTATTGAGAGGAAAGAACCTAGGGTTTACGATTGGCGAGGCTATCGTGAGCTCGTGATGATGGCTTGCATGTGTGGCCTCAAGGTTCGTGCTGTTCTTGCTTTCCATCAGTACGGCACAGGCCCTGATGATCCTAATCAGATACCGCTTCCTCTATGGGTGCTTGATGAGATAAACAAAGATCCAGAGTTAGCATATTCTGACCGGTTTGGAAGAAGAAATATTGAATACATTTCCCTAGGATGTGATACTCTTCCTGTGCTGCGTGGACGCACTCCTATTCAAGCATATGCAGATTTTATGAGAGACTTCAGGGAGACTTTCAGGCCTTCTCTTGGCCTTACCATTACAAGGGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCGTCATTCTCTTTCCAGAAGCCAAATGTGGCTTCATCTGGTGGACTTGGAGAGTTCCAATGCTATGATAAGTACATGCTAGCTTCTCTAAATGCCTGTGCGAGAAAAATTGGAAAGCGTGAATGGGGAGATGGTGGTCCATTTGGTGCGGGAAGTTTGACGCAAAATCCTGAGCATACTGATTTCTTTAAAAATGAGGGTGGCTCTTGGAACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAAATATGCTGCTGCTGCATGGAGAGAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCTTATATCTGCAGAAGTAGCTGCCATTCACTGGCACTACGCCATTCAATCCCATCCATCGGAGTTAACCGCAGGCTATTATAATACTTTCGACAGGGATGGATATTTGCCCATTGCTCGCCTGTTTAGTAAGTATGGGTTTGCAATTTGCTGCTCTTGTTTTGAAATGCAAGATGCCACAATGCAAAAGATAAACCCTAGTGGTAGCCCTGAAGGATTTCTTAAACAGCTTTTGCTGGCTGCTAGGCTTTGTGACATATCACTTGAAGGTCAAAATTTTACAACTGATTTAGATGATGATGCATTCTCCCAAGTGCTGAAGATGTCAAAGTTTTACTCGGATGGGATTGAAAAGCGGCCCTTTGCATTCAACTTTGTAAGAATGAACAAAAGAATGTTTGAAACCCAGAATTGGGATCGGTTTGCACGATTTGTGAGGCAGATGTCTAATGGAAAGATTTTTCAAGCCAGACTaagagcccatttgggaagtagcagaagctactctttttga 1734 0.4608 MGGGRWVMTDLSANLAEKLRFKGKMKNPVFSRWGKNKQTLPSLWGLRPYLGCLSFMGEVNTAAVVCAAELPSLSRLCYQDLVPQRKLSPAAPYSYRSAAVVVIRGTDSVVVLWIFRHRLRETRGSPVFVTLPVNTVGPEGKISRPRAMMFSLKALAAAGVEGVVVEFWWGIIERKEPRVYDWRGYRELVMMACMCGLKVRAVLAFHQYGTGPDDPNQIPLPLWVLDEINKDPELAYSDRFGRRNIEYISLGCDTLPVLRGRTPIQAYADFMRDFRETFRPSLGLTITRVQIGMGPGGELRYPSFSFQKPNVASSGGLGEFQCYDKYMLASLNACARKIGKREWGDGGPFGAGSLTQNPEHTDFFKNEGGSWNTPYGKFFLEWYSNMLLLHGERICREAETIFRGTEVLISAEVAAIHWHYAIQSHPSELTAGYYNTFDRDGYLPIARLFSKYGFAICCSCFEMQDATMQKINPSGSPEGFLKQLLLAARLCDISLEGQNFTTDLDDDAFSQVLKMSKFYSDGIEKRPFAFNFVRMNKRMFETQNWDRFARFVRQMSNGKIFQARLRAHLGSSRSYSF 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03002 577 Pfam Glycosyl hydrolase family 14 128 551 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PANTHER - 118 570 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 SUPERFAMILY (Trans)glycosidases 123 564 IPR017853 -
Aip03g03002 577 Gene3D Glycosidases 116 573 - -
Aip03g03002 577 PANTHER BETA-AMYLASE 118 570 - -
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 202 223 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 371 390 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 407 423 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 424 435 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 294 316 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 442 465 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 159 173 IPR001554 GO:0000272|GO:0016161
Aip03g03002 577 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 180 198 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03002 Aip-Chr3 87467982 87474325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03002 126 558 Glycoside Hydrolase AT4G17090 50.922 1.46e-155 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03002 K01177 - gmx:100805981 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03002 03 87467982 87474325 Aip03g03002 03 87467982 87474325 ECH