Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02781 ATGGCACATTTTACAGTGCATGATCGCTTGAAGCAACGGAGCAGCCTTTCAAGTTTCAGCAGATTGATGAGTTGGAATTTGTATAAGACAATTttgtggcccgaaagtaatgagGTCAAGCAAATTCATGCTTGGGTCACTGTTTGTGGAATGAGTGATATCGATGTGTTGGGTTCAAGAATTGCAGGGTTGTATGTTCTTTGTGGTAGCATCAGGGATGCTAGGAACTTGTTTTTCAGGCTTGAGTTGGGCTATGCACTTCCCTGGAATTGGATGATAAGAGGGTTTGTGATGTTGGGGTGGCATGATTTTGCATTGTTGTTTTACTTCATGATGTTGGGTAGTGGAGTCTCGCCTGATAAATACACTTTCCCTTACATTATAAAAGCTTGTGGTGGTTCAAATAATGTTGCATTGGGTAAGATGGTGCATAACACAATTCGGTCAATAGGGATCCATGTGGACTTGTTTGTTGGTAGTGCCTTGATCAAGTTGTATGCAGATAATGGGTGTATTTGTGATGCAAGGCAAGTGTTCGATGAATTGTCTGTAAGAGACTGCGTTTTGTGGAATGTCATGCTAAATGGTTATGTAACTAGCAGTGATTTTAACAATGCAATAGAAACTTTTCAGGAAATGAGGAATTGTTATATCAAACCCAATTCAGTAACTTTTACTTGTATGTTATCATTATGCTCTACAAGAGGGATGTTTTATGTTGGTACTCAGCTTCATGGTCTTGTTATTGGTAGTGGGTTCCAGCATGATTCGCAGGTAGCAAACACACTACTTTCCATGTATTCCAAATGTGGTAACCTTGTTGATGCATATAGTGTGCTTCATGTGGGGTCTGCCATCACAGATATGTATTCAAAATGTGGAAGACTAGATCTTGCATATCAATTTTTCAGAAGGATGCCTGAAAGAGATAGTGTATGTTGGAACTCACTGATTACAAGCTTCTCACAGAATGGTAAACCAGAAATGGCTATTAATATTTTTCGTGGAATGGGAAGGAGTGGAACCAAGTTTGATTCCGTGAGCCTATCATCTGCACTTTCTGCGAGTGCAAATATACCGGCACTCTATTCTGGGAAAGAGATGCACGGCTTTGTGATAAGAAATGCATTTACTTCTGACACTATTGTTACAAGTGCACTGATAGACATGTATTCTAAATGTGGAAAATTAGCCATGGCTCAGTATGTGTTTGACCTGATGTACTGGAGGAATGAAATTTCATGGAATAGCATCATTGCTGCATATGGAAACCATGGTCGCCCCAGGGAATGTCTCGATCTATTCCATGAAATGTTAAAAGCCGGGATTCACCCGGATCACGTTACTTTCCTTGTTATAATATCTGCTTGTGCTCATGCTGGCCTAGTTGATGAAGGCATATCATATTTCCGTTGCCTGACTGAAAGCTATGGGATTTGTGCTAAGATGGAGCACTATGCATGCATGGTAGATTTGTATGGTCGAGTTGGTTGTTTGCACGAGGCACTCGATACTATAAAGAGCATGCCGCGTGCTCCAGACGCAGGTGTTTGGGGGACACTACTAGGAGCTTGTCGGGTTCATGGCAATGTTGAGTTGGCCAGACTAGCTTCCGAACATCTTCTGGAGTTAGACCCCCAAAATTCGGGGTACTATGTATTGCTTTCGAATATACATGCCGGTGCAGGGGAGTGGTCAGATGTTCTTAAGATTCGAAGTCGAATGAAGGAAAAAGGAGTTCAGAAAATATGCGGATACAGCTGGATTGATGTGAACGGCAGCACCCATATGTTTTCTGCTGCTGATGGTAGTCACCCACAATCTTTTGAGATCTATATGATTCTGGAGAGTCGTCTCCTTGAGTTAAAAAAACAGGGTTATGTTCCTCAACCATACCTTCCACTGCATCCACAAGTCGTTGTAAAAACTTGA 1932 0.4115 MAHFTVHDRLKQRSSLSSFSRLMSWNLYKTILWPESNEVKQIHAWVTVCGMSDIDVLGSRIAGLYVLCGSIRDARNLFFRLELGYALPWNWMIRGFVMLGWHDFALLFYFMMLGSGVSPDKYTFPYIIKACGGSNNVALGKMVHNTIRSIGIHVDLFVGSALIKLYADNGCICDARQVFDELSVRDCVLWNVMLNGYVTSSDFNNAIETFQEMRNCYIKPNSVTFTCMLSLCSTRGMFYVGTQLHGLVIGSGFQHDSQVANTLLSMYSKCGNLVDAYSVLHVGSAITDMYSKCGRLDLAYQFFRRMPERDSVCWNSLITSFSQNGKPEMAINIFRGMGRSGTKFDSVSLSSALSASANIPALYSGKEMHGFVIRNAFTSDTIVTSALIDMYSKCGKLAMAQYVFDLMYWRNEISWNSIIAAYGNHGRPRECLDLFHEMLKAGIHPDHVTFLVIISACAHAGLVDEGISYFRCLTESYGICAKMEHYACMVDLYGRVGCLHEALDTIKSMPRAPDAGVWGTLLGACRVHGNVELARLASEHLLELDPQNSGYYVLLSNIHAGAGEWSDVLKIRSRMKEKGVQKICGYSWIDVNGSTHMFSAADGSHPQSFEIYMILESRLLELKKQGYVPQPYLPLHPQVVVKT 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02781 643 PANTHER - 5 277 - -
Aip03g02781 643 PANTHER - 280 334 - -
Aip03g02781 643 Gene3D Tetratricopeptide repeat domain 283 361 IPR011990 GO:0005515
Aip03g02781 643 Gene3D Tetratricopeptide repeat domain 53 136 IPR011990 GO:0005515
Aip03g02781 643 PANTHER - 328 639 - -
Aip03g02781 643 PANTHER - 280 334 - -
Aip03g02781 643 PANTHER - 5 277 - -
Aip03g02781 643 Pfam PPR repeat family 411 458 IPR002885 -
Aip03g02781 643 Pfam PPR repeat family 186 232 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 89 117 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 261 280 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 385 407 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 312 341 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 288 309 IPR002885 -
Aip03g02781 643 Pfam PPR repeat 486 511 IPR002885 -
Aip03g02781 643 Pfam E motif 528 590 IPR046848 -
Aip03g02781 643 Gene3D Tetratricopeptide repeat domain 385 609 IPR011990 GO:0005515
Aip03g02781 643 Gene3D Tetratricopeptide repeat domain 137 282 IPR011990 GO:0005515
Aip03g02781 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Aip03g02781 643 SUPERFAMILY TPR-like 290 571 IPR011990 GO:0005515
Aip03g02781 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Aip03g02781 643 PANTHER - 328 639 - -
Aip03g02781 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Aip03g02781 643 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Aip03g02781 643 TIGRFAM PPR: pentatricopeptide repeat domain 188 221 IPR002885 -
Aip03g02781 643 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02781 Aip-Chr3 58381830 58384990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02781 69 636 Glycoside Hydrolase AT3G49170 34.321 2.79e-111 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02781 - - aip:107630554 1237.63