Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02670 ATGGCGACAGCTCAGCTAACAGCATCCTCAATTTCCTCGAGGAACGTGTCGTCGTTCGAAGGGCTTCGACCTTCGGCGGTTCAGTTCCCCTCCGTCGTCAGAATTGGAACCCTCACTCAAAGGTCCTTCCGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCTCCAAAGTACACTGCTATTAGGCCTCTCGGCGACAGAGTACTGGTTAAAATTAAGGAAGCAGAAGAGAAGACCGACGGAGGAATTCTACTTCCTTCAACTGCTCAAACAAAACCACAGGGTGGTGAGGTTGTTGCTGTTGGAGAGGAGAAATCAGCTGGGAAGAGCAAAATAGAAACTAGTGTTCAGATTGGTGCGCAAGTTGTGTATTCGAAATATGCTGGTACTGAGGTGGAGTTCAATGGTGCAAAGCATCTTATACTGAAGGACGATGACATTGTTGGTATCCTCGAGACCGATGAGATCAAGGATCTTAAACCGTTGAATGATAGAGTCTTAATACAGGTTGCACAAGCAGAGGACAAAACTGCAGGTGGTTTGTTGCTTACCGAAGCAAGCAAGGAGAAACCTTCTATTGGAACGGTAATTGCGATCGGCCCAGGGCCTCTTGATGAGGAAGGTAACAGAAAACCATTGTCTGTTAATCCTGGGAACACAGTCTTGTACTCCAAATATGCTGGGAACGACTTCAAGGGAAAAGATGGTTCGGACTACATTGCATTGAGGGTCTCAGATATCATGGCTGTCCTTTCCTAG 759 0.473 MATAQLTASSISSRNVSSFEGLRPSAVQFPSVVRIGTLTQRSFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEEKSAGKSKIETSVQIGAQVVYSKYAGTEVEFNGAKHLILKDDDIVGILETDEIKDLKPLNDRVLIQVAQAEDKTAGGLLLTEASKEKPSIGTVIAIGPGPLDEEGNRKPLSVNPGNTVLYSKYAGNDFKGKDGSDYIALRVSDIMAVLS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02670 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Aip03g02670 252 SUPERFAMILY GroES-like 59 152 IPR011032 -
Aip03g02670 252 Hamap Co-chaperonin GroES [groES]. 60 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Aip03g02670 252 Gene3D GroES chaperonin 53 153 IPR037124 GO:0006457
Aip03g02670 252 Gene3D GroES chaperonin 154 252 IPR037124 GO:0006457
Aip03g02670 252 ProSitePatterns Chaperonins cpn10 signature. 159 183 IPR018369 GO:0005524|GO:0006457
Aip03g02670 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 SMART Cpn10_2 60 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 CDD cpn10 61 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PANTHER GROES CHAPERONIN 1 252 - -
Aip03g02670 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 Pfam Chaperonin 10 Kd subunit 61 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 ProSitePatterns Chaperonins cpn10 signature. 61 85 IPR018369 GO:0005524|GO:0006457
Aip03g02670 252 PRINTS 10kDa chaperonin signature 61 76 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PRINTS 10kDa chaperonin signature 181 202 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PRINTS 10kDa chaperonin signature 216 228 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 PRINTS 10kDa chaperonin signature 238 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aip03g02670 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02670 Aip-Chr3 50591498 50593302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02670 1 252 Calmodulin-binding Proteins AT5G20720 74.409 4.10e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02670 K04078 - gmx:100814751 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02670 03 50591498 50593302 Aip03g02670 03 50591498 50593302 ECH