Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02655 ATGGTGGAAGAAAACACAACAACAACATCAACAACAAAACATGATTGGTTCGAAACCCAAGCCGTCTTGGATTTGAAGCGTTGGTTCCAAGCAATCATATCCTCACACAAGACCCTCTTTACACTCCTATGGCTGGCGGCGTTCACCTCCGCCTTCCTGTGGCAGAGGGATGCCGTTAGTGGGTTGGTGGTGTTGCACGGTGGCGGTGAGTCTCTTAAGAAGAGTGAAAGTTCATTGTTGTATCCTAAGCTGAGGCCCGCGGGCTTCAGCTTAGTGGATTTCGGTGGCGTTGGCGATGGCGTTACGATGAACACTAAGGCGTTTGAGAGGGCGGTTTCAGAGATTTCTAAGTTGGGTGAGAAGGGTGGTGGGCAGCTGAATGTGCCGCCTGGTAGGTGGCTCACTGCACCTTTTAATCTCACCAGTCATATCACTCTTTTTCTTCATCAAGATGCTGTCATTCTTGGAGTTCAGGATGAAAAGTACTGGCCACTGGTGCCTGCATTGCCTTCATATGGATATGGAAGGGAGCATCCTGGCCCTCGTTACACCAGCTTGATCCATGGCCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGCAGAAGGTTCTGAACCACACAAGGGGTCCACTGGTTCAGATCTTATGGTCTAGTGACATTCTTATAACTAACATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATACGATTGCAAGAATGTTACAATAAAAAACCTTACAATTTTGGCTCCTGTGTATCGTGCACCAAATACTGATGGCATTGATCCTGGAAAAACAGATTCATGTGAAGATATGTTGATAGAGAACTGTTACATAAGCGTGGGAGATGATGCAATTGCCATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCCGGCATCTCAATCGGCAGCGAAATGTCCGGCGGTGTATCGAACGTGACGGTGGAGAACATCCTTGTATGGAAATCCAGGCGTGCTATTCGGATCAAGACAGCGCCGGGAAGAGGCGGCTTCGTGCGCCAAATATCTTACAAGAATCTGACCTTTGAGAATTGCAGAGTTGGAATTGTCGTCAAAACAGACTACAACCAACACCCTGACGCCGGATACGACCCGAAAGCGCTTCCTCTTCTGGAGGACATAAGCTTCACGGGCGTCCGGGGCCAGGCAGTACGAGTGCCGGTACGGATTCAAGGCAGCCAGGACATTCCTGTTACAAATGTGACTTTTAAGGACATGTTTGTCGGATTAATTTCGAAGAGGGTGAAGAAGAAGAAACATATCTTCCAGTGTGCCTTTGTTCGTGGTCAAGTAATAGGGACTATCTTCCCTGCCCCTTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAGCTAGTTAAGCATGCTGTATCATGGAATGTCACAGATATAGATTACCAAATATGA 1545 0.4634 MVEENTTTTSTTKHDWFETQAVLDLKRWFQAIISSHKTLFTLLWLAAFTSAFLWQRDAVSGLVVLHGGGESLKKSESSLLYPKLRPAGFSLVDFGGVGDGVTMNTKAFERAVSEISKLGEKGGGQLNVPPGRWLTAPFNLTSHITLFLHQDAVILGVQDEKYWPLVPALPSYGYGREHPGPRYTSLIHGQNLTDVVITGHNGTINGQGQTWWTKYLQKVLNHTRGPLVQILWSSDILITNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYRAPNTDGIDPGKTDSCEDMLIENCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWKSRRAIRIKTAPGRGGFVRQISYKNLTFENCRVGIVVKTDYNQHPDAGYDPKALPLLEDISFTGVRGQAVRVPVRIQGSQDIPVTNVTFKDMFVGLISKRVKKKKHIFQCAFVRGQVIGTIFPAPCENFDQYNEQGQLVKHAVSWNVTDIDYQI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02655 514 PANTHER PECTIN LYASE-RELATED 29 512 - -
Aip03g02655 514 Pfam Glycosyl hydrolases family 28 184 456 IPR000743 GO:0004650|GO:0005975
Aip03g02655 514 Gene3D - 70 473 IPR012334 -
Aip03g02655 514 SUPERFAMILY Pectin lyase-like 80 487 IPR011050 -
Aip03g02655 514 SMART pbh1 321 343 IPR006626 -
Aip03g02655 514 SMART pbh1 349 370 IPR006626 -
Aip03g02655 514 SMART pbh1 287 308 IPR006626 -
Aip03g02655 514 SMART pbh1 256 283 IPR006626 -
Aip03g02655 514 SMART pbh1 378 399 IPR006626 -
Aip03g02655 514 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 29 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02655 Aip-Chr3 49765635 49769502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02655 30 514 Glycoside Hydrolase AT3G42950 69.857 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02655 - - adu:107479176 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02655 03 49765635 49769502 Aip03g02655 03 49765635 49769502 ECH