Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02020 ATGGTAGTACTCACTCGTCTGAAATCCGCTTTACATCTTCTTCCTCGTTCTTCCGTGACCTACGCAACCTCTGCCTCTTCCACCTCCAACCTCTTACCGGCGAAGAGGAATCAAATCGCCGCCGTTTATGTCCCGCAGGATTTGTACCGTCGGATATTCACTGTGACCGATCCAACTCTCCCGGTTGTTACGATTCTCGAGCAGTGGGTTCAGGATGGCCAAACTCTTACCTACGATAAACTGCTATTCCTTATCAAGCAACTTAGGTCACGCAAAAGATATAAAAACGCCCTCGAGGTGTCATTTTGGATGTCTGACAAAGGATACTCTGAACCTGGATCTGCAGAATTTAGTTTAAGACTGGACTTGATTGCAAAGGCTAAGGGAATAGAAGAAGCTGAATCCTATTTTGATAGCATTCCGAAATACTCAAGAGCTGCAGAATGTTACAGCTCTCTTCTTAATTGCTATGCTCAAGTTAGGGATGTGGATAAAGCTGAAAGGATCATGCTGCAGATGAAACATTTGGGTTTTGCAAGGTCTACTTTGGCGAGAAATTCTTTGCTTAACCTCTACTATCAAACACAAAACTATGACAAAGTGGAAAATTTGTTGCTTGAAATGAAAGAAGAGGGTGTTAAATTCGATAGATTTACATACGCCACCTTGATTAATACATATGCGGCCAAATCTGATATAGAAGGAATCGACAAACTTCTTGCACAGTTAGAAGATGATCCATCGTATTCCCAACATGTAGATTGGTGGAGTGTTTATGCTGTGGCAGCCAATTGGTATGGCAAACTCGGGCTTCATGATAAAGCTTTTAACGCTTTAAAGAAATCAGAGAAGCGCCTGAGTTATACAATCTGGAATGAGGCCTTTCCTTACCTTATGACTCAATATGCAACAATAGGGAAGAAAGAAGAAGTGATGAGGTTGTGGAATATTTACATGATGGATGGGAAGTTACTCAAAAAACAGTATTATTCAGCTGTAGTAAGTTCATTTCTCAAGGTGGATGAGATTGAACTTGCTAAGAGTATCTTTGAGGAGTGGGAATCTAGAAATCGGTATTTCAGAAATTTCTTTATTCCGAACAAGATGATAGCAGCTTACAGCAGAAACGGCAATATGGAGGAAGCTGAAGCCATTGTTAATAGGACAATCATGAAGGGAGGAAAGCCAAATTTATGGACTTGGTCATGGCTCTTGTTTGGATATGTTTCCCAAAGAAATTTTGCGAGGGCTGTTCGATGTATGAAAGAGGCAGTTTCTATCTGTGAAGTGGGGTGTAAGTGGAGGCCACTACTGGAATCCTTAGCTGCCATTTTTCAGTACTTGAAATTTAATGGAGATATGGAGGAGGCAGAGGATTTGATAAGGTCACTCAGTAGCAAGAATATTATCTCGCTTGATGTTCATAACAAGCTGATGAGTTGGATTAAGGATGTGGAGTCAAATGTGCCTGCAATTGATGTGCTGGGTTTAGATTCTCATAAACAAACAGGACCAATTGATGTAGGTGAATGGTTCACCAAAAAGACTGCTTCTAAGTTGCTCAAATACGGAGAACCACTTCCGTTTATTCAACCAAACCCAGCTTATCAACGTGGTTGCAGCCACAGCCGTTGCAACGCGGCCTCCTTCAGTTCCATCGTCAATACTAGCCTCTGCTCAGCCACATTGCTTCTTTAG 1698 0.4176 MVVLTRLKSALHLLPRSSVTYATSASSTSNLLPAKRNQIAAVYVPQDLYRRIFTVTDPTLPVVTILEQWVQDGQTLTYDKLLFLIKQLRSRKRYKNALEVSFWMSDKGYSEPGSAEFSLRLDLIAKAKGIEEAESYFDSIPKYSRAAECYSSLLNCYAQVRDVDKAERIMLQMKHLGFARSTLARNSLLNLYYQTQNYDKVENLLLEMKEEGVKFDRFTYATLINTYAAKSDIEGIDKLLAQLEDDPSYSQHVDWWSVYAVAANWYGKLGLHDKAFNALKKSEKRLSYTIWNEAFPYLMTQYATIGKKEEVMRLWNIYMMDGKLLKKQYYSAVVSSFLKVDEIELAKSIFEEWESRNRYFRNFFIPNKMIAAYSRNGNMEEAEAIVNRTIMKGGKPNLWTWSWLLFGYVSQRNFARAVRCMKEAVSICEVGCKWRPLLESLAAIFQYLKFNGDMEEAEDLIRSLSSKNIISLDVHNKLMSWIKDVESNVPAIDVLGLDSHKQTGPIDVGEWFTKKTASKLLKYGEPLPFIQPNPAYQRGCSHSRCNAASFSSIVNTSLCSATLLL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02020 565 Pfam PPR repeat 149 178 IPR002885 -
Aip03g02020 565 Pfam PPR repeat 367 390 IPR002885 -
Aip03g02020 565 Pfam PPR repeat 330 357 IPR002885 -
Aip03g02020 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Aip03g02020 565 Gene3D Tetratricopeptide repeat domain 318 436 IPR011990 GO:0005515
Aip03g02020 565 Gene3D Tetratricopeptide repeat domain 79 292 IPR011990 GO:0005515
Aip03g02020 565 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 36 495 - -
Aip03g02020 565 Pfam Pentatricopeptide repeat domain 186 227 IPR002885 -
Aip03g02020 565 PANTHER OS12G0527900 PROTEIN 36 495 - -
Aip03g02020 565 TIGRFAM PPR: pentatricopeptide repeat domain 149 179 IPR002885 -
Aip03g02020 565 TIGRFAM PPR: pentatricopeptide repeat domain 367 397 IPR002885 -
Aip03g02020 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02020 Aip-Chr3 28868471 28870610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02020 48 501 EF-hand Containing Proteins AT1G02150 30.263 4.97e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02020 - - ahf:112729653 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02020 03 28868471 28870610 Aip03g02020 03 28868471 28870610 ECH