Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01963 ATGGATCTTCTGCGCGACGCATATTACCATGCCTCAGACGACGAAGATCAGCCCAAACGTCAGAGGCTATCACTCTCGTCTTCTTCTTCTTCTTACCCTCCAAAACCCTATTTTCCTCCAACTCCTTCTCCATCTTCTTCTCTCAATCCAAATCCCATTCCTGGAAGCTATGTTTCAAAGAGACAACGAGCACTTCTCGCTCCTCTCCCTGACCCTGACCCTATCCCTCTCCCGCTTCACTCTTCGTCTACACATTCTGCCACAGGAAGTATCTCAGATGCTGATATACCACGTAATGTTTTATCATTACTGAAAAACAAACCGAAGTGTCATCAAAGCCTGAATCCGATGCCCGAAAAGCTATCTGCGGCTCTATGTGGGCATACCAAAGCCGTCAATGCTATACATTGGTCATCAACTCATGCTCATCTCCTGGCATCTGCTGGGATGGATCATACGGTTTGCATTTGGAATGTATGGAGCAGAGATCAGAAGAAGGCACGCATGTTGAACTTCCACAATGCAGCGGTGAAAGATGTGAAATGGTCTCCACAAGGGCTCTTTCTACTTTCATGTGGGTATGATCATACATCGAGATTGATCGACGTTGAAAAGGGATCAGAGACTCAGGTTTTCAAAGAAGATCAAGTTGTTGGAGCTATTAAGTTCCATCCGAACAATTCAAATCTTTTCCTTTCTGGGGGATCACAGGGCCATATCAAACTATGGGATATCAGAACTGGAAAAGCAGCGCATAACTATACTCGGAATTTAGGTCCTATTTTGGATGTTGAGTTTATGGTGAACGGGAAGCAATTCATTTCTTCTAGTGATGTATCTAGGAGCAATGTCAGCGAGAACTCTATCATTGTTTGGGATGCTTCAAGGGAGGTTCCGTTGTCTAATCAGGTTTATGCAGAAGCTTATACTTGTCCGTGTATAAGGTGCCATCCATTTGATTCGACTTTTGTTGCCCAATCAAATGGGAATTACATTGCTATTTTTACTGCCACCCCGCCTTACAGACTCAACAAATATAAGCGGTACGAGAGCCATGGTGTCTCTGGCTTTCCAATTACTTGCAACTTCAGCTTGGATGGGAAGAAGCTTGCCTCTGGGTCTTCAGATGGTTCTATTTACCTTTACGATTATCAGTCATCAAAAGTTTTAAACAAAATCAAGGCCTACGACCAAGCATGCATCGATGTCACCTTCCACCCTGCTCTACCTAACGTTATCGCTTCGTGCTCATGGGACGGAAGTATTTCTGTGTTTGACTTGCAAACATAA 1290 0.4411 MDLLRDAYYHASDDEDQPKRQRLSLSSSSSSYPPKPYFPPTPSPSSSLNPNPIPGSYVSKRQRALLAPLPDPDPIPLPLHSSSTHSATGSISDADIPRNVLSLLKNKPKCHQSLNPMPEKLSAALCGHTKAVNAIHWSSTHAHLLASAGMDHTVCIWNVWSRDQKKARMLNFHNAAVKDVKWSPQGLFLLSCGYDHTSRLIDVEKGSETQVFKEDQVVGAIKFHPNNSNLFLSGGSQGHIKLWDIRTGKAAHNYTRNLGPILDVEFMVNGKQFISSSDVSRSNVSENSIIVWDASREVPLSNQVYAEAYTCPCIRCHPFDSTFVAQSNGNYIAIFTATPPYRLNKYKRYESHGVSGFPITCNFSLDGKKLASGSSDGSIYLYDYQSSKVLNKIKAYDQACIDVTFHPALPNVIASCSWDGSISVFDLQT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01963 429 ProSitePatterns Trp-Asp (WD) repeats signature. 145 159 IPR019775 -
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 392 IPR001680 GO:0005515
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Aip03g01963 429 CDD WD40 121 426 - -
Aip03g01963 429 SUPERFAMILY WD40 repeat-like 115 425 IPR036322 GO:0005515
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 159 - -
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 249 - -
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 167 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 344 383 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 386 426 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 163 202 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 118 158 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 205 244 IPR001680 GO:0005515
Aip03g01963 429 SMART WD40_4 247 293 IPR001680 GO:0005515
Aip03g01963 429 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 17 425 - -
Aip03g01963 429 Gene3D - 104 426 IPR015943 GO:0005515
Aip03g01963 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Aip03g01963 429 MobiDBLite consensus disorder prediction 1 21 - -
Aip03g01963 429 MobiDBLite consensus disorder prediction 1 91 - -
Aip03g01963 429 MobiDBLite consensus disorder prediction 33 49 - -
Aip03g01963 429 Pfam WD domain, G-beta repeat 349 383 IPR001680 GO:0005515
Aip03g01963 429 Pfam WD domain, G-beta repeat 218 244 IPR001680 GO:0005515
Aip03g01963 429 Pfam WD domain, G-beta repeat 168 201 IPR001680 GO:0005515
Aip03g01963 429 Pfam WD domain, G-beta repeat 124 158 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01963 Aip-Chr3 27311117 27317296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01963 218 429 Miscellaneous Gene Families AT5G08390 22.066 1.37e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01963 K24742 - gmx:100790592 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01963 03 27311117 27317296 Aip03g01963 03 27311117 27317296 ECH