Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01956 ATGAAGATTATTATTATGATTGGTATGTTTGTGTGCCTGGTAGCACAGCTCTCTGTGAAGGTAGAATCAATAAGCAGAACAGATTTTCCAGATGGGTTTATTTTTGGAACTGCTTCTTCAGCTTTCCAGTTTGAAGGAGCTGTAGATGAAGGAAACAAAGGAGATAGCATATGGGATACCTTCTCAAGAATTCCAGGAAGAATATTGGACTTCAGTAATGCAGACACGGCTGTGGATCAATATCACCGATTTCAGGATGATATTGACTTGATGAAGGATTTGGGAATGGACTCTTACAGATTTTCCATATCTTGGTCAAGAATTTTCCCAAATGGATCAGGGGAACCAAATGCAGAGGGAATAAAATATTATAACAGCTTCATTGATGCTTTGCTGAAGAAAGGAATCCAGCCTTTTGTAACTCTATATCATTGGGATCTTCCACAGATGCTTGAAGATCAATATGAAGGATGGATTAGCACACAAGTAATAAAAGATTTTGAGCATTATGCCTATACCTGCTTCGAAGCTTTTGGTGACAGAGTTAAGCATTGGATTACTTTCAACGAACCGCATAATTTCGCACTCCATGGGTACGATTTAGGCATTCAAGCACCTGGAAGGTGTTCACTTTTGGGCCATCTTATATGTAAGAAGGGAAAATCATCAACTGAACCATACATTGTTGCTCACAACATTCTTCTATCTCATGCTGCTGCCTATCATTGTTACCAAATGCATTTTAAGGAAAGACAAGGAGGTGAAGTAGGAATAGCATTAGATGCTGTTTGGTATGAACCAATAACTGATCTTGATGAAGACAAAGATGCAGCATCAAGAGCCATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAATATCCTCAAACAATGCAAGAACTTGTAGCTGAGAGATTACCAGAGATTTCTGATGCAGACTCAAACTTTCTTGTGGGATCCTTAGATTTTATTGGCATAAATCACTATACATCGATATATACTCGTAATGACAGGACCAGGATTCATAAATTCATAATGCAAGATGCTTCATCTGATGCAGCTGTCATTACAACTGCATACCGCAAAGGAGCTATAATTGGAGAAAGGGCAGCATCAAGTTGGCTGCACATTGTGCCATGGGGCATCCGAAAGATAGTAAATTATGTGAATAGAAAATATGGTAACACACCTATAATTATAACAGAAAATGGAATGGATGACTCTAACATTATACCCTTTACGACCTTAGATAAGGCCTTAAATGATGAAAAGAGGATAAATTATCACCGGGACTATCTCTCTAATTTATCTGCAGCTATAAGGGAAGATGGCTGCAATGTTAAAGGTTACTTTGTGTGGTCGTTGCTTGACAATTGGGAATGGAATTCGGGCTACACTGTCCGGTTTGGACTTTACTACGTGGATTACAAGAATAACCTTACTAGGATACCGAAAGCTTCGGTGACATGGTTCAAAAACATGCTCAGATTAGAACGAGAAATGACAAGTCAAAGTTAA 1530 0.3869 MKIIIMIGMFVCLVAQLSVKVESISRTDFPDGFIFGTASSAFQFEGAVDEGNKGDSIWDTFSRIPGRILDFSNADTAVDQYHRFQDDIDLMKDLGMDSYRFSISWSRIFPNGSGEPNAEGIKYYNSFIDALLKKGIQPFVTLYHWDLPQMLEDQYEGWISTQVIKDFEHYAYTCFEAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLICKKGKSSTEPYIVAHNILLSHAAAYHCYQMHFKERQGGEVGIALDAVWYEPITDLDEDKDAASRAMDFSLGWFLDPLFFGKYPQTMQELVAERLPEISDADSNFLVGSLDFIGINHYTSIYTRNDRTRIHKFIMQDASSDAAVITTAYRKGAIIGERAASSWLHIVPWGIRKIVNYVNRKYGNTPIIITENGMDDSNIIPFTTLDKALNDEKRINYHRDYLSNLSAAIREDGCNVKGYFVWSLLDNWEWNSGYTVRFGLYYVDYKNNLTRIPKASVTWFKNMLRLEREMTSQS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01956 509 Pfam Glycosyl hydrolase family 1 27 500 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PRINTS Glycosyl hydrolase family 1 signature 324 338 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PRINTS Glycosyl hydrolase family 1 signature 402 410 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PRINTS Glycosyl hydrolase family 1 signature 426 437 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PRINTS Glycosyl hydrolase family 1 signature 448 465 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PRINTS Glycosyl hydrolase family 1 signature 472 484 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 PANTHER GLYCOSYL HYDROLASE 14 500 IPR001360 GO:0004553|GO:0005975
Aip03g01956 509 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Aip03g01956 509 Gene3D Glycosidases 14 500 - -
Aip03g01956 509 PANTHER BETA-GLUCOSIDASE 41-RELATED 14 500 - -
Aip03g01956 509 SUPERFAMILY (Trans)glycosidases 22 499 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01956 Aip-Chr3 26788630 26793810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01956 19 445 Glycoside Hydrolase AT5G54570 72.430 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01956 K01188 - gmx:100783543 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01956 03 26788630 26793810 Aip03g01956 03 26788630 26793810 ECH