Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01947 ATGGCGGGTCGAGGCAAAACATTAGGATCTGGCAACGCCAAGAAGGCCACCTCTCGGAGCAGCAAGGCCGGTCTTCAATTCCCCGTTGGTCGTATTGCCCGTTTCCTGAAGGCTGGAAAATACGCCGAACGGGTCGGTGCCGGCGCCCCCGTTTACCTCGCCGCCGTCCTTGAATACCTAGCCGCCGAGGTTCTTGAGTTAGCTGGGAACGCTGCGAGAGATAACAAGAAGACCAGAATTGTGCCACGTCACATTCAATTGGCGGTTAGAAATGACGAAGAGTTAAGCAAGCTTCTTGGAGATGTAACAATTGCCAACGGTGGTGTGATGCCCAACATTCACAACCTCTTGCTTCCTAAGAAGACCGGAACCTCGTCCAAGGCTGCTGGCGATGATGATTCTTAG 405 0.5358 MAGRGKTLGSGNAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKAAGDDDS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01947 134 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PANTHER HISTONE H2A.6 2 132 - -
Aip03g01947 134 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g01947 134 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Aip03g01947 134 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Aip03g01947 134 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
Aip03g01947 134 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Aip03g01947 134 Pfam Core histone H2A/H2B/H3/H4 11 90 IPR007125 GO:0003677
Aip03g01947 134 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Aip03g01947 134 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01947 Aip-Chr3 26637187 26638395 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01947 K11251 - pop:7454400 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01947 03 26637187 26638395 Aip03g01947 03 26637187 26638395 ECH