Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01928 ATGCGCGCCTCCACCATAAGAAAACTATGCACCCTCAGCACCCTATATCGCTCTCACTCAGCATGGAAAGCCATGGCACTTGCCTCTTCCTCTTCCGTTTCCATTTCTGAGCACAATGCTTCTGAGTTCAACCATTCTTCTATGAGCCACAACCGTGTCCCTTCTCGAGGTGCAGAGGATTCTCCTGATGATGATAATACGGCTTCCGAGGTTTCTTCTATAGTGTACAGTCCATCTCTGGCAGAGGAACCTGTTGTCGTGAAAGAGGAACCTGTTGTCGAAGAAGTTGACTATCGCAAAGCAAAAATGGAAAAAGTAGCAGATTTAACGTGGTGTCCTAATCTGTCTCCTGGCTACCTTTTGACTAAACGGAGGGGGTTAGCCCGTGAGAGGAAAAGCAAATGGATTTTTAAACTCAGCCATGATGTCCGTTTTGATAGGTTAGTTAAAATGTGTGCGAAAAGACTAGGAACAGGGACGACCCTTGATGTGTTTCGTCAGCTGGGTCGAGAGACTGGTGTGAAAGAGTTCAATGCATTAATAAAGATGAGTATACAGAAGGCAAGGACTACTGATAATGAATACATTGCCATAGAAGAATTGAGTAAGGCTTTTCACCTTTTAGAAAATATGAAGGAGTGCGGTTTTAAGCTAGAAGAGGAAACATATCAACCACTGCTTAGGTATGTCATAGACATGGGCATGGTTAAAGAGTTTCAACTTTTCTCTGATGTGGTCAGAGCTGAGTGTTCAGTTTCACGGTTAGGTTACTATGAAATGTTGCTGTGGATAAGAGTTGAAGATGAAGAAATGATTCGGGATATTTGTGAATATATTACCGTAGAAGATGGCCAAGACACTGCTGCTATGCGAGAAAATTACTTATTGGCTCTTTGTGAAAGTGATCTGAAGTTCCAGATTACAGATGTGTTGAAAAATATAGACATAACAATGTTTTCATCTGCAAAATCTATAGCAAGTGTATTTCAATCATTAGGAAGGCTACAGTTGGAATCTCTTGCCGAGAATTTATTTTTGGATTTGAGAGCACAAGATTTTGATGAAGATGATATTTCAGGCTTCATTGCTGATTTTGCTGTTAGCACTCCAAATTTAGCGGTTGAAGATATCATCTCAAAATTCAAGAGTTTGCATGATCTATTGGAAGTTTTACATTCATCGTCATCATATGAAAAGCTGATTATGTATTGCTGTGATATAGGCAAGGTTGATGTTGCACTTGATCTTGTTGATAATATGTGTGAAGCAGGCTTTACATTGTCAACTAGGATGTTACAGTCCATATTACACATTTGTGAGGAAACCTATGAACATATTTTGGTTTACCGGATCTATTCTATCATACAGCGGTTCCATTTGAAGTTGAATGGTGAAATATGTAGGTGTTTGGTAAATTTTTGCGTGAGGGTGAAAGATTTTAAAGGTGCATACAAGATGGTTGATGACTTGGAGAAAATGAATTTCAAACCTACTACCGCCATGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAAAATATCAGTGGTGCTTTGAGGGTCCTCAAGCACATGCAGGATGCCAATGTTAATCCTGATGTACAGACTTTCAGCTATTTGATTAGTAATTGTGAAACAGAAGAGGATATAATCAAGTATCGTGAAGAAATGGAGCAATATAAAATCCCACTTGCAAAACCGATTTTTATGGCCCTTATTAATTCATATGCAGCTTGTGGCAAATTGGATATGGCAAAACAGGTCATTTTGGATCCGAACATACCAGCAAAAAGCTTAAATGAAATCAAGAGCGTCCTTGTCTCAGCTCTTGCATCACATGGGCAGTTGTCCGAGGCACTTTTAGTATATGAGGAGATTAATAAAGCTGGATACAATTTGGAACCAAAAGCTGTTATAAGTCTTATCGAAGAGTTCACCAAATTCAAAGGAGAGTTGGATGGGATGCTTATGCTACTTACAGAATTGAGTGATCTAGACTATTGGGTCGATGGCTGCTTCAGAGTTATCATATATTGTGTTCACAACAAGCATCTAAGTTCTGCTATTGACTTGTTCAAGAAACTCAAGGATAAGTTTGAAAGTGATGAACTAGTATTGGAAGTTCTCTTTGATGAAGTGTTTGCTGCAATTGCAACATCCGAGTCCTCAAATTTGCAGATTGGTTTAGACTTGCTTTGGGCAGTCAAGAACGAGCTTGGTCTCGTGCCTTCACGGCAATGTCTTGATTTTCTTCTAAGTGCCTGCACCAATGCTGGAGATTTGAGTAATGCTCGTTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCATACAATGTGCTAAGTTATTTGAGGATGTATCAAGCACTTTTGGCATCGGGAGATTATAGATCTGCTAACTTTATGCTAAGTAAAATTCCGAAAGATGACAGCGAGGTATCTGCTATCATCAAAGCCTGTCAAGAAACATACTCTGGTCTTTCCTCTGTGGCAAAGAAGAAAACGAAAGTAACAAAAAAGAAAGAAAAACGAGAGGCTTGA 2541 0.3935 MRASTIRKLCTLSTLYRSHSAWKAMALASSSSVSISEHNASEFNHSSMSHNRVPSRGAEDSPDDDNTASEVSSIVYSPSLAEEPVVVKEEPVVEEVDYRKAKMEKVADLTWCPNLSPGYLLTKRRGLARERKSKWIFKLSHDVRFDRLVKMCAKRLGTGTTLDVFRQLGRETGVKEFNALIKMSIQKARTTDNEYIAIEELSKAFHLLENMKECGFKLEEETYQPLLRYVIDMGMVKEFQLFSDVVRAECSVSRLGYYEMLLWIRVEDEEMIRDICEYITVEDGQDTAAMRENYLLALCESDLKFQITDVLKNIDITMFSSAKSIASVFQSLGRLQLESLAENLFLDLRAQDFDEDDISGFIADFAVSTPNLAVEDIISKFKSLHDLLEVLHSSSSYEKLIMYCCDIGKVDVALDLVDNMCEAGFTLSTRMLQSILHICEETYEHILVYRIYSIIQRFHLKLNGEICRCLVNFCVRVKDFKGAYKMVDDLEKMNFKPTTAMYNAIMAGYFREKNISGALRVLKHMQDANVNPDVQTFSYLISNCETEEDIIKYREEMEQYKIPLAKPIFMALINSYAACGKLDMAKQVILDPNIPAKSLNEIKSVLVSALASHGQLSEALLVYEEINKAGYNLEPKAVISLIEEFTKFKGELDGMLMLLTELSDLDYWVDGCFRVIIYCVHNKHLSSAIDLFKKLKDKFESDELVLEVLFDEVFAAIATSESSNLQIGLDLLWAVKNELGLVPSRQCLDFLLSACTNAGDLSNARLIWREYEVAGFPYNVLSYLRMYQALLASGDYRSANFMLSKIPKDDSEVSAIIKACQETYSGLSSVAKKKTKVTKKKEKREA 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01928 846 Gene3D Tetratricopeptide repeat domain 141 312 IPR011990 GO:0005515
Aip03g01928 846 PANTHER OS02G0132600 PROTEIN 25 840 - -
Aip03g01928 846 PANTHER OS02G0132600 PROTEIN 25 840 - -
Aip03g01928 846 Pfam Pentacotripeptide-repeat region of PRORP 395 542 IPR033443 -
Aip03g01928 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Aip03g01928 846 Pfam PPR repeat 569 589 IPR002885 -
Aip03g01928 846 Pfam PPR repeat 605 630 IPR002885 -
Aip03g01928 846 Gene3D Tetratricopeptide repeat domain 673 846 IPR011990 GO:0005515
Aip03g01928 846 Gene3D Tetratricopeptide repeat domain 392 561 IPR011990 GO:0005515
Aip03g01928 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Aip03g01928 846 MobiDBLite consensus disorder prediction 41 69 - -
Aip03g01928 846 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Aip03g01928 846 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01928 Aip-Chr3 26135763 26150575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01928 390 799 Glycosyltransferase AT1G05670 20.464 4.65e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01928 - - ahf:112737814 1600.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01928 03 26135763 26150575 Aip03g01928 03 26135763 26150575 ECH