Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01606 ATGGGCACTTCTAATCCTAACATGCTGCTAAATTATGTTCCGGTTTATGTCATGCTCCCACTAGGAGTCGTGAATGTGAACAATGTGTTTGAAGATCCAGAAGGCCTAAAGAAACAACTATTGCAGCTAAAGGAAGCAGGCGTTGATGGCGTGATGGTTGATGTGTGGTGGGGGATCATAGAACTGAAGGGTCCAAAACAATATGATTGGGGGGCATATAGGAGCTTGTTCAAGCTGGTTCAAGAATGTGGCCTGAAACTGCAGGCAATAATGTCATTCCATCAATGTGGAGGAAATGTAGGAGATATTGTCAATATCCCAATTCCAAAATGGGTGCTTGAGATTGGAGATTCGGATCCTGATATCTTTTACACCAATAGATCAGGTAACAGGAACATAGAGTATCTCAATATTGGTGTGGATAACCTCCCTCTTTTCCATGGTAGAACAGCCATCCAGATATACAGTGATTACATGAAGAGTTTCAAGGAAAACATGTCAGATTTTATAGAATCCGGACTAATTATAGACATTGAAGTTGGGCTTGGACCAGCAGGAGAGCTAAGATTCCCTTCTTATCCACAAAGTCAAGGATGGGAATTTCCTGGTATTGGGGAGTTTCAGTGCTATGACAAATATTTGAAGGCAGAGTTTAAAGCTGCTGCAGCTAAAGCTGGCCATGCTGAATGGGAACTGCCAGATGATGCAGGGTCTTACAATGATGTACCAGAATCTACTGAGTTCTTCAAATCAAATGGCACATACCTCACTGAGAAAGGGAAGTTCTTCTTAACCTGGTATTCCAACAAATTGCTGATCCATGGCGATCAGATCCTAGAGGAAGCCACCAAAGCTTTCCAGGGCTGCAATGTCACGATAGCAATTAAAGTCTCTGGAATTCATTGGTGGTACAAATCTGAAAGTCATGCTGCTGAGCTCACTGCTGGATATTACAACCTTCAAGATAGAGATGGGTACCGTCCTATTGCAAGGATGCTGACTCGTCATCATGCCATTTTGAACTTCACATGTCTTGAGATGAGGGACTCGGAACAAAGCTCTGATGCAAAGAGCGCACTTGGAGAGAAAAAATTGAAGTTGCTGGTGAAAATGCACTGCCAAGGTATGATGCTGCAGCTTACAACCAAATGA 1152 0.4288 MGTSNPNMLLNYVPVYVMLPLGVVNVNNVFEDPEGLKKQLLQLKEAGVDGVMVDVWWGIIELKGPKQYDWGAYRSLFKLVQECGLKLQAIMSFHQCGGNVGDIVNIPIPKWVLEIGDSDPDIFYTNRSGNRNIEYLNIGVDNLPLFHGRTAIQIYSDYMKSFKENMSDFIESGLIIDIEVGLGPAGELRFPSYPQSQGWEFPGIGEFQCYDKYLKAEFKAAAAKAGHAEWELPDDAGSYNDVPESTEFFKSNGTYLTEKGKFFLTWYSNKLLIHGDQILEEATKAFQGCNVTIAIKVSGIHWWYKSESHAAELTAGYYNLQDRDGYRPIARMLTRHHAILNFTCLEMRDSEQSSDAKSALGEKKLKLLVKMHCQGMMLQLTTK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 307 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 274 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 319 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 349 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 205 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 Pfam Glycosyl hydrolase family 14 16 353 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Plant beta-amylase signature 329 339 IPR001371 GO:0000272|GO:0016161
Aip03g01606 383 PRINTS Plant beta-amylase signature 173 182 IPR001371 GO:0000272|GO:0016161
Aip03g01606 383 PANTHER - 4 360 IPR001554 GO:0000272|GO:0016161
Aip03g01606 383 SUPERFAMILY (Trans)glycosidases 9 359 IPR017853 -
Aip03g01606 383 PANTHER BETA-AMYLASE 6 4 360 - -
Aip03g01606 383 Gene3D Glycosidases 5 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01606 Aip-Chr3 18729515 18732250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01606 8 362 Glycoside Hydrolase AT2G32290 71.629 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01606 K01177 - gmx:547931 629.402