Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01586 ATGTCTAAGGAGGTGTCGTTGTTTTTGGGATTGGTTATGGGGTTTGTGTTTGTTGGAGTGGCTTTTGCTGCTGCCACTGCCAAGTTTGAAGAACTCTTCCAACCAAGTTGGGCTTTAGACCATTTCATTCATGAAGGAGACCTTCTCAAACTCAAGCTTGATAACTATTCCGGTGCTGGGTTTGTATCCAAAAGCAAGTATATGTTTGGGAAAGTTACCGTCCAACTTAAACTTGTTGAAGGTGATTCTGCCGGAACAGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAATCACAACGAGTTTGATTTTGAGTTCCTGGGGAACACCACAGGGGAACCTTACTCTGTTCAAACAAATGTGTATGTGAATGGAGTGGGAAATAGAGAGCAAAGGCTAAACCTTTGGTTTGACCCTACTAAAGACTTTCATTCTTACTCTTTCTTTTGGAACCAACGTCAAGTTATATTTCTAGTGGATGAAACACCAATAAGGGTGCACACAAACATGGAACACAGGGGTATTCCATTTCCAAAGGACCAAGCAATGGGTGTTTATAGCTCAATTTGGAACGCTGATGATTGGGCCACACAAGGTGGAAGAGTGAAAACTAATTGGAGCCATGCACCTTTCATTGCAACATATAAGGCCTTTGAGATCAATGCTTGCGAGTGTCCAATAGTGTCATCAAAATCAGTGGAAAATTTGAAGAGGTGTAGTAGTAATGAGAAGAAGTATTGGTGGGATGAGCCTAATTTGGGTGTGTTAAGTTTGCATCAAAGTCACCAACTTATGTGGGTTAGGGCCAAACATATGGTTTATGATTATTGTGCTGATACTGCTAGGTTCCCTGTTATGCCTGCTGAGTGTGTTCATCATAGTCACCACAAACTAGTGCTCAAAAATTAG 909 0.4158 MSKEVSLFLGLVMGFVFVGVAFAAATAKFEELFQPSWALDHFIHEGDLLKLKLDNYSGAGFVSKSKYMFGKVTVQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSFFWNQRQVIFLVDETPIRVHTNMEHRGIPFPKDQAMGVYSSIWNADDWATQGGRVKTNWSHAPFIATYKAFEINACECPIVSSKSVENLKRCSSNEKKYWWDEPNLGVLSLHQSHQLMWVRAKHMVYDYCADTARFPVMPAECVHHSHHKLVLKN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01586 302 PRINTS Glycosyl hydrolase family 16 signature 59 77 IPR008264 GO:0004553|GO:0005975
Aip03g01586 302 PRINTS Glycosyl hydrolase family 16 signature 117 130 IPR008264 GO:0004553|GO:0005975
Aip03g01586 302 PRINTS Glycosyl hydrolase family 16 signature 135 152 IPR008264 GO:0004553|GO:0005975
Aip03g01586 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 293 IPR013320 -
Aip03g01586 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 294 - -
Aip03g01586 302 Pfam Glycosyl hydrolases family 16 31 207 IPR000757 GO:0004553|GO:0005975
Aip03g01586 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aip03g01586 302 CDD GH16_XET 24 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g01586 302 Gene3D - 15 296 - -
Aip03g01586 302 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aip03g01586 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 215 IPR000757 GO:0004553|GO:0005975
Aip03g01586 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 294 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01586 Aip-Chr3 17978368 17980939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01586 59 295 Glycoside Hydrolase AT4G03210 72.574 1.27e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01586 K08235 - gmx:100801567 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01586 03 17978368 17980939 Aip08g00809 08 8383717 8386031 PCT