Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01542 ATGAACAACGGAAACAAGATGCGAGCGGCATTCATAATTGCGACTGTAACAGCAATCTCCATCTTCTTAACCGCAATGAACCGCAGAAGAATCCGTAACCGTAACAAGAAATCACCTTCGAGTTCGTGTTATTTACATTCCGAACCGAAGCCGCAGAGTTCCTTTAAGCGCGTCTTGGCGGATAATTCTTACACTCCTTTCAAGCACTTGAAGAATCTCAACGACTCTTCTAACAATGATAAAGCTTCAAATTTGCATCCATTTGAGGCAGTGATCACAGCATTGTTGAAAAATTCTTGGCCTGAAATTGAACTTACTACTGAGATTGTGGACATGGAAATGAATGATTCTTATGTTTGGGTCAATACAGAGCTGCAAGTAAAGGAATTGGCCAATGTGTTAAGCAAAGAGAGATTCTTTGCTGTGGACACAGAACAACATAGCTTACGATCTTTTCTAGGCTTTACAGCATTGGTTCAGATTTCTACCCAGAAGAAAGATTATTTGGTTGACACAATCGCGCTACATGATCTAATGCCAATTCTTTGCCCAGTTTTTGCGGATCCTTCTATTTGTAAAGTGTTCCATGGGGCTGACAATGATGTTGTCTGGCTACAAAGGGACTTCCATATATATGTTGTTAATCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAGCCACAGAAATCACTTGCTTATCTACTTGAAACTTACTGCAGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCCCTCTCAGCAGAAATGGTGCATTATGCACGAACAGATGCACACTATTTGTTGTATATTGCAAACTGTTTGATTGCTGAGCTCAAACAACTTGACAATGAAAACTCTTGTGACGATGACAAATTCCATTTTGTTCACGAGGCTAGTCGGCGTTCAAACATAATCTGTTTGCAACTTTTTACAAAAGAAGTTGAAGCTTCTCCTGGTGATTCTGCTGCATCATCATTATTTTCTCGTCATGTGAGTGGTCAAGGCTTCACTTCAGTTTCCAATGAATCCCAGTTTCAGACTATTGTGAAGCAACTGTGTGGATGGAGAGACCTGATGGCTCGCATTCATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAACCTTTGTCAAGTGAATCCGAAATATACAATCTCATAGCTCTGGTTGATAATAATGTGGAAATGGGTCTCAATTTTTTCATCCATTCCCCATCTCCTGTTGTTTGCAGCCACTTGAGTGATATCCATCATATTCTTGCAGACAAGTTGATTGACCATGCTCACATTTATTCATGGATTATTCAAAAGTGCCTGGGTCCAAATGGGACTTGTCCACTTTCTATATTTAATTATGCTTTGCTGTTTAACAGTAACTTAAAACCTAGCTTAGCTTATAAACCCTCTGGTCTAAAAAATCATAGACAGATATCCCGGAAAGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCCTGTAAGGCTCCTGTTTATCATAACTGCCGGATATTTGCTAATGATGGGAGGCTGCTTTGTTACTGTGATAAGAAGAAGCTTGAGTGGTACCTAAGTCGGGATCTCGCAAAACTTGTTGATAAGGACCCACCAGCTATAATGCTTCTATTTGAACCCAAAGGTCGCCCAGAGGATGAAGACAATGATTTCTACATTCAGAGCAAGAGAAATATATGTGTTGGATGTGGTGAAGGAAGTCACTACTTACGGTACCGAATAATCCCATCCTGTTACAGAATGCATTTTCCTGAGCATTTAAAAAGCCATCGTTCTCATGATATTGTTCTACTCTGCGTGGACTGCCACGAAATTGCCCATGCGGCTGCAGAGAAGTATAAGAGAAAAATAGCTGCTGAATTTGGAATTCCTCTGTACGTTCAAAGGGTCGTTCATCCTGAACAAGAGCCTAATATACAGATTGAGGAGGGTGTATCTCCATTACAGTTACGTACAGCAGCTATGGCTCTTATACGCCATGGACCAAGAATGCCTCAAAATCGCCGTGAAGAACTGACTGAGGTTGTGAAGAGATATTATGGAGGAAGAGAAATATCTGAGGAAGATCTAGAAAGAGCCCTGATAGTTGGCATGAGTCCTCATGAGAGAAGACGGTTTGAGAAGAAGAGGGGTTTCTCTTTCAGACATGTGGGTAAAATAACAGCAGTGTCTGAAGAGGAAAACCCTGCTGATTCCACAACCAGAATTAGTAATGGGGATGCATCAAAGGTTGGTTCCCTTGATGATGGTTCATGTGCAAATGAAGAAACAAGTAATGATGTAGATAGAGAACATTTGATGGTAAACGATGATTCAGGAAACCCTTCTTTAGCTTCTGATCTTGCAGTTGATGCATCTGTCTCTCCTGATACTTCAAATGGGTACACAAGCTCATTTGAAATTGTGGATTATAGTGAAATTAGTGACTCTGTTACAAATGTTGATGGCACTAGTCTGAGTAAAAAGCAACCAAATGGAAGTGATGACTTATCTTATCCTCCCAACGATGAAGAATCGACTCAAACTAAACATAATTCAAAACAATCACTCTTAGGACATGGACCGCATGGACAAGAAGTTGTAGAACATTTAATGAAGGAATATGGGGAAGAAGGCATTGGACAGTTCTGTCAACGGTGGAGACAAGTATTTGTTGAAGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGGCTCTGA 2763 0.4054 MNNGNKMRAAFIIATVTAISIFLTAMNRRRIRNRNKKSPSSSCYLHSEPKPQSSFKRVLADNSYTPFKHLKNLNDSSNNDKASNLHPFEAVITALLKNSWPEIELTTEIVDMEMNDSYVWVNTELQVKELANVLSKERFFAVDTEQHSLRSFLGFTALVQISTQKKDYLVDTIALHDLMPILCPVFADPSICKVFHGADNDVVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCSVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLIAELKQLDNENSCDDDKFHFVHEASRRSNIICLQLFTKEVEASPGDSAASSLFSRHVSGQGFTSVSNESQFQTIVKQLCGWRDLMARIHDESLKYVLSDQAIVALASQPLSSESEIYNLIALVDNNVEMGLNFFIHSPSPVVCSHLSDIHHILADKLIDHAHIYSWIIQKCLGPNGTCPLSIFNYALLFNSNLKPSLAYKPSGLKNHRQISRKASRDLFVQKFSCKAPVYHNCRIFANDGRLLCYCDKKKLEWYLSRDLAKLVDKDPPAIMLLFEPKGRPEDEDNDFYIQSKRNICVGCGEGSHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEFGIPLYVQRVVHPEQEPNIQIEEGVSPLQLRTAAMALIRHGPRMPQNRREELTEVVKRYYGGREISEEDLERALIVGMSPHERRRFEKKRGFSFRHVGKITAVSEEENPADSTTRISNGDASKVGSLDDGSCANEETSNDVDREHLMVNDDSGNPSLASDLAVDASVSPDTSNGYTSSFEIVDYSEISDSVTNVDGTSLSKKQPNGSDDLSYPPNDEESTQTKHNSKQSLLGHGPHGQEVVEHLMKEYGEEGIGQFCQRWRQVFVEAVNPRFLPAGWDVKHRL 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01542 920 SUPERFAMILY HRDC-like 349 413 IPR010997 GO:0000166|GO:0044237
Aip03g01542 920 SUPERFAMILY Ribonuclease H-like 50 288 IPR012337 -
Aip03g01542 920 Gene3D - 48 323 IPR036397 GO:0003676
Aip03g01542 920 MobiDBLite consensus disorder prediction 740 796 - -
Aip03g01542 920 Pfam HRDC domain 354 408 IPR002121 GO:0003676
Aip03g01542 920 SMART 35exoneu6 118 286 IPR002562 GO:0003676|GO:0006139|GO:0008408
Aip03g01542 920 MobiDBLite consensus disorder prediction 829 869 - -
Aip03g01542 920 PANTHER PROTEIN RRP6-LIKE 3 2 918 - -
Aip03g01542 920 MobiDBLite consensus disorder prediction 743 758 - -
Aip03g01542 920 MobiDBLite consensus disorder prediction 829 872 - -
Aip03g01542 920 Gene3D HRDC domain 343 442 IPR044876 -
Aip03g01542 920 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 918 IPR045092 GO:0000175|GO:0000467
Aip03g01542 920 ProSiteProfiles HRDC domain profile. 349 429 IPR002121 GO:0003676
Aip03g01542 920 Pfam 3'-5' exonuclease 118 285 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01542 Aip-Chr3 17200479 17207454 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01542 K12951 - gmx:100791485 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01542 03 17200479 17207454 Aip03g01542 03 17200479 17207454 ECH