Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01539 atgCTAAGTTCGGTTTCTTCTCTCTCTCTTTCCTCTCCCATTGAATTATTTGCCATGGCTAAGAGCTCGTTCAAGATGGAACACCCACTTGAAAGGAGGCAGGCTGAGGCAGCTCGCATAAGAGAGAAGTATCCTGATAGAATTCCAGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAAAAAGGCCATCTTCATTTTTGTGAAGAACATTTTGCCACCAACTGCGGCTATTATGTCTGCGATTTATGA 270 0.4111 MLSSVSSLSLSSPIELFAMAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKKGHLHFCEEHFATNCGYYVCDL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01539 89 Pfam Autophagy protein Atg8 ubiquitin like 32 67 IPR004241 -
Aip03g01539 89 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 10 67 IPR004241 -
Aip03g01539 89 Gene3D - 13 74 - -
Aip03g01539 89 SUPERFAMILY Ubiquitin-like 21 67 IPR029071 -
Aip03g01539 89 PANTHER AUTOPHAGY-RELATED PROTEIN 10 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01539 Aip-Chr3 17063793 17067846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01539 K08341 - ming:122060154 91.6633