Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01373 ATGATAGTGGTTGGTGCATTAATATTATTAACGGTGACAGAGAGAAGCAGGGGTCACGATTATGGAGATGCATTATCAAAGAGTATATTGTTCTTTGAAGCTCAGAGGTCAGGGAAGTTGCCACCAACACAGAGGGTTACTTGGAGGAAGGATTCCGCCGTCCACGACGGCGATCAATTTCAGGAAGGCGTGTCCCACTTGTACCGCAAACTTGACTTGGTTGGCGGTTACTACGACGCCGGCGACAACGTGAAGTTCAACTTTCCAATGGCATTCTCAACAAGCATGCTAGCATGGAGTGTGATACAGTTCGGGAGTTCCATGGGAGCAGAACGAAAGCACGCTTTAGAGGCTATTCGTTGGGGCACGGAGTACCTGATGAAAGCAACTAGCGTTCCTGGCTATGTGGTTGTACAGGTTGGTGATCCCTACAGTGACCACAATTGTTGGCAGAGGCCTGAAGACATGGACACTTCTAGAACCTTCTATGCGGTTAGCAAGGAGTGCCCTGGTTCTGAGGTTTCGGCGGAGATTGCAGCTGCGCTTGCAGCTTCTTCCATTGTCTTTAAACGATATCAACTTGCTTATTCTGCTAGGCTTCTCCGAAGAGCTAGAATGGTGTTTGAGTTTGCAGATAAGTACAGAGGATCTTACAATGACGGCCTTGGACACTGGGTATGCCCATTCTATTGTGATTATAGTGGCTACCAGGTGTGTAATTTTCCATATTATGACAGTATATTATTCAAGCTTCATTTATATTCATTATGGTATTTGAAATCTATACAGGATGAATTGGTGTGGGGAGCAGCATGGTTGTTCAAGGCTACTAAAAACTCTTATTACCGGAAATACATTGACGAAAACATTCACAATCTCAAAACCTTCGCTGAATTTGGATGGGACTCCAAGGATGCTGGCATCAATGTGCTTCTTTCTACGCTTATGATTAGTAATAGTAGTAACTCTAATGCGGACAACTTTATCTGTTCTGTGCTACCTGAATCGCCTTCCCTATCAGTTTCATACTCTCCAGTAGGAGGGCTTATGTTCAAGCAAGGAGGGAGTAACTTGCAGCATGCAACGGCATTTTCATTTCTTTTCCTGGTTTATGCTGACTATTTGAACAAAGTTAATAGACACGTTGACTGTGGGGGTAAAGCTTCTGCAATATCCCCAACGCGACTTATACAATTTGCCAGAAGCCAGGTGGATTACATATTAGGAAGCAACCCATTGAAGATGTCATACATGGTAGGGTACGGAGAAAAGTATCCAAAAAGAATACATCACCGTGCATCTTCATTACCTTCCATAGATATGCAGCGTGGCCACATCGATTGCAAAGGAGGATCCTCTTATTTTCAAAGCCAAAACCCTAATCCCAATGTCCTTCTTGGAGCTCTAGTTGGGGGACCTGATATCAATGATCAATATGCTGATTCTCGATCCGATTTTGTGCACTCAGAACCTACAACCTATATAAATGCACCTTTTGTTGGTGCTTTGGCATATTTCAAATCACATCCATCCTCAAAACCAAATTAA 1548 0.436 MIVVGALILLTVTERSRGHDYGDALSKSILFFEAQRSGKLPPTQRVTWRKDSAVHDGDQFQEGVSHLYRKLDLVGGYYDAGDNVKFNFPMAFSTSMLAWSVIQFGSSMGAERKHALEAIRWGTEYLMKATSVPGYVVVQVGDPYSDHNCWQRPEDMDTSRTFYAVSKECPGSEVSAEIAAALAASSIVFKRYQLAYSARLLRRARMVFEFADKYRGSYNDGLGHWVCPFYCDYSGYQVCNFPYYDSILFKLHLYSLWYLKSIQDELVWGAAWLFKATKNSYYRKYIDENIHNLKTFAEFGWDSKDAGINVLLSTLMISNSSNSNADNFICSVLPESPSLSVSYSPVGGLMFKQGGSNLQHATAFSFLFLVYADYLNKVNRHVDCGGKASAISPTRLIQFARSQVDYILGSNPLKMSYMVGYGEKYPKRIHHRASSLPSIDMQRGHIDCKGGSSYFQSQNPNPNVLLGALVGGPDINDQYADSRSDFVHSEPTTYINAPFVGALAYFKSHPSSKPN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01373 515 PANTHER ENDO-1,4-BETA-GLUCANASE 260 510 - -
Aip03g01373 515 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 479 497 IPR033126 -
Aip03g01373 515 PANTHER ENDO-1,4-BETA-GLUCANASE 7 237 - -
Aip03g01373 515 Pfam Glycosyl hydrolase family 9 21 503 IPR001701 GO:0004553|GO:0005975
Aip03g01373 515 SUPERFAMILY Six-hairpin glycosidases 5 508 IPR008928 GO:0005975
Aip03g01373 515 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 406 432 IPR018221 -
Aip03g01373 515 PANTHER ENDOGLUCANASE 260 510 - -
Aip03g01373 515 PANTHER ENDOGLUCANASE 7 237 - -
Aip03g01373 515 Gene3D - 16 514 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01373 Aip-Chr3 14107928 14110136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01373 2 509 Glycoside Hydrolase AT1G70710 54.352 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01373 K01179 - gmx:100775752 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01373 03 14107928 14110136 Aip03g01373 03 14107928 14110136 ECH