Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip03g01308 | ATGGCATTTCACGTAGCTTGCCCAATTACATGTCGTAGAATCTGCTTCTGCGCCTTAGGGTTTCCGCGAGCTCTTCATGGAACTGAAGCTTCCAATGGCTTCCTCAACGACGTTGCCGCGCTCGGCGAATTCCTCTCCGACAATCGAAAGGACACGGCCACCGTCAAGGTTGCAGTTCCCAAGGTCGTACCGCCTCCTCCGCCGCCGAATCCTACGCCGGATGGAGGAGTACCTGCCGCGGAAGAGGAGTCCGCATCGATGAAGGCAAAGCGCGTGGCACTGCAGCGGAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAATACGCTCGCCGGTTGGAGTCCGGTGATGTTGCGGATGCACCTGGAAATCCTGTTGGAGAAGAACCGGGCCAAGCTAATGCCAAAGTCTTTTGTCGAATGTGTAATCGTGTTGAAAACGAAGGAAGCGAGAGAGCAAAGAAGATGCTATCGTGTAAGAGTTGTAACAAGAAGTATCATAGGAACTGCTTGAGAAGTTGGGCACAAAATAGAGATTTGTTTCATTGGAGCTCATGGACCTGCAGGGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACAGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGTGATGGTGCTTACCATTGTTATTGTCTGCAACCTCCTCATAAGAATGTTAGTACTGGGCCATATTTGTGCCCAAAACATACAAGGTGTCACAGTTGTGGATCCAATGTTCCCGGAAATGGACTGAGTGTGAGGTGGTTTCTAGGGTACACCTGCTGTGATGCATGCGGAAGATTGTTTGTGAAAGGCAACTACTGTCCAGTCTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATATTTGCCAGCGTTGGGTGCATTGTCACTGTGATAATATTAGTGATGAGAAATATCACCAATTTCAAGTGGATCGGAATTTGCAGTATAAATGTCCTACTTGTCGTGGGGAATGTTATCAGATCAAGGGACTTGAGGATGCAGTTCAAGAGCTTTGGAAGAGAAGAAATATTGCTGATAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAGGAAGAAATATTTTCTATTTCACCATTTTCAGATGATGAGGATAGCGAGCCTTTGAAATTAAAGAGTGAATCTGGCCGTTCCTTTAAATTCTCTTTAAAGAATTTATCGAATAACTCACCCAAGAAGTTTAAGGATTATATAAAGAAATCTTCAAACAAAAATTCTAAGAAAAAGGACTCTCAGTCGGTTATGACTAATAAACCAGACATGCACTATAGTTTTGAAGGACAAAGCGATGTAAAATCTTTACATAGCTTGGATGATGATAAGAATGATGATATACAATCCCAAAGAAATGAAGGTCCTGAAGTTTATTCATCCCCTGCTGCTGGAAGCCTGAGCCAAACTGAAGTATCTTGTCCTATCAACAAGACAGGGATTTTGAAACATAAGTTTGTTGATGAGGTGATGGTTAGTGATGAAGAGAGGAAGCCCAGAGTTTTCCGAATCAAAAATAATAAGGCACATATACTGAATAGTGAAGATGAGATTGGAAAAGATGGTGATAAGGCTGAGAGTGTCAAAGGTAAGAAGTTGGTCATTAATTTGGGTGCACGGAAAATTAATGTGGCTAATTCTCCCCGCTCTGATACTTCAAGCTGCCAAAGGGATCAAGATCTGGTTACTGTTAATGGAAGTGAAGATATAAGCCAAGTAAGGAAAGGATTTGCATCAGATAGACATGATGGAGCCGCTAGACGTGTTGATGGAAGCAATGTTGACTCTGGCCAATCAAAACATTTAAAGGTTTCAGGTAGAGAAGAAAATTTCATTAAACTGGGGAAATTGAAGCCAGAAGTTCAGAAATTCACTCTACCATCTGGTAGAGGTGAGGTTCCTTTAGATCAAACTCGCATCTTGCAGGGAAAACGTGGTACTGATGCAAACGTGGAAGCAACACCAAGAGGTGAAAGAACATATCATCGGAGGCCGAAAGAAGGCATTTCTGATGCATATGATGGGACAGATAACAATCATAATCAAACACCTTCACATTCTTTGGCAAAAGATTCTAAACCACTACTCAGATTTAAATTCAAGAAACCTAGTGTAGAAAGTAAAAATTCTATTATTCAAGAGGAAGAAAAGACTACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTCAAGGAGAAAGCATCATTTAATGAGGCTGGAGATGTAAATCAATCACAGACGGGAAATCTAATGGATGAAATCATGGATGCTAACTGGATATTGATGAAGTTGGGCAATGATGCAATTGGTAAAAGAGTTGAAGTTCATCACACATCGGACAATTCTTGGCATAAGGGAGAGGTTACTGATATAGTTGAAGGCTCATCGAAATTGTACGTTACCTTAGATGATGGGAAGATCAAGACCGTGGAACTCAGGAAGCAGGGAGTTCGCTTTGTTTCTCAAAAGCAGAAAAGGTCAAAGACATGA | 2547 | 0.4283 | MAFHVACPITCRRICFCALGFPRALHGTEASNGFLNDVAALGEFLSDNRKDTATVKVAVPKVVPPPPPPNPTPDGGVPAAEEESASMKAKRVALQRKGAAAMIAAEEYARRLESGDVADAPGNPVGEEPGQANAKVFCRMCNRVENEGSERAKKMLSCKSCNKKYHRNCLRSWAQNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDNISDEKYHQFQVDRNLQYKCPTCRGECYQIKGLEDAVQELWKRRNIADRDLIASLRAAAGLPTQEEIFSISPFSDDEDSEPLKLKSESGRSFKFSLKNLSNNSPKKFKDYIKKSSNKNSKKKDSQSVMTNKPDMHYSFEGQSDVKSLHSLDDDKNDDIQSQRNEGPEVYSSPAAGSLSQTEVSCPINKTGILKHKFVDEVMVSDEERKPRVFRIKNNKAHILNSEDEIGKDGDKAESVKGKKLVINLGARKINVANSPRSDTSSCQRDQDLVTVNGSEDISQVRKGFASDRHDGAARRVDGSNVDSGQSKHLKVSGREENFIKLGKLKPEVQKFTLPSGRGEVPLDQTRILQGKRGTDANVEATPRGERTYHRRPKEGISDAYDGTDNNHNQTPSHSLAKDSKPLLRFKFKKPSVESKNSIIQEEEKTTIKGQRSKRKRPSPFKEKASFNEAGDVNQSQTGNLMDEIMDANWILMKLGNDAIGKRVEVHHTSDNSWHKGEVTDIVEGSSKLYVTLDDGKIKTVELRKQGVRFVSQKQKRSKT | 848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 412 | 434 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 61 | 75 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 662 | 707 | - | - | |
| Aip03g01308 | 848 | ProSiteProfiles | Zinc finger PHD-type profile. | 273 | 332 | IPR019787 | - | |
| Aip03g01308 | 848 | ProSiteProfiles | Zinc finger PHD-type profile. | 135 | 193 | IPR019787 | - | |
| Aip03g01308 | 848 | CDD | PHD_SF | 137 | 190 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 595 | 615 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 411 | 487 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 690 | 705 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 667 | 689 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 722 | 763 | - | - | |
| Aip03g01308 | 848 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 332 | IPR013083 | - | |
| Aip03g01308 | 848 | SUPERFAMILY | FYVE/PHD zinc finger | 129 | 191 | IPR011011 | - | |
| Aip03g01308 | 848 | SMART | PHD_3 | 275 | 330 | IPR001965 | - | |
| Aip03g01308 | 848 | SMART | PHD_3 | 192 | 238 | IPR001965 | - | |
| Aip03g01308 | 848 | SMART | PHD_3 | 137 | 191 | IPR001965 | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 61 | 84 | - | - | |
| Aip03g01308 | 848 | SUPERFAMILY | FYVE/PHD zinc finger | 182 | 243 | IPR011011 | - | |
| Aip03g01308 | 848 | ProSitePatterns | Zinc finger PHD-type signature. | 138 | 190 | IPR019786 | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 451 | 467 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 468 | 487 | - | - | |
| Aip03g01308 | 848 | SUPERFAMILY | FYVE/PHD zinc finger | 274 | 330 | IPR011011 | - | |
| Aip03g01308 | 848 | PANTHER | HISTONE ACETYLTRANSFERASE | 2 | 842 | - | - | |
| Aip03g01308 | 848 | PANTHER | PHD FINGER FAMILY PROTEIN | 2 | 842 | - | - | |
| Aip03g01308 | 848 | MobiDBLite | consensus disorder prediction | 722 | 738 | - | - | |
| Aip03g01308 | 848 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 247 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip03g01308 | Aip-Chr3 | 13322624 | 13329340 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip03g01308 | - | - | gmx:100815407 | 1267.29 |