Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01246 ATGAGTGATTCTAAGGTATTTCTATTTGGGTCTTTTACAGAAGATGAAACCAGATCATTGTTGCAGAAGCAGTCTTCTACTCCGGTTAAAGATGAAAAGCCTGTAGAGAAGAGCCCGCTGCAATTTGGTTCTCTGAATGCTGTTAGTGCCAAATCAAGTGACCCCAGAAATTCATCAAAAGCACCAACCAGTTCTAATGTCTCCCATTCTCATAAGTGCAATGGAGTGACAATTGTCGGTATTAGTTTACCTGGATCATCAGGTTCTATCAAGGAGAATGGCAGCAGTACCAATTACCCTATTGTCTGTTCGATACTCGGCAGTGCAAACATAGTTAAGGCGGATAGTGTGTCTTCTGTGCCATTGCTTGATGAGGATGGACCCACGAACAAGATTGCAAATTTGAGCCTGGATGCTTCTGAGGCTGGAAGCCTGAATAATGTGTGGAAAAATGATGGTGGCCATAATGATTCTGTATCAAAATTATTTAATCAAGATTCCAAAAAGACACCTAACGGGCATATTGTGTCACGAGTTAAAGATTTACTGCCTCGGGGCCTAATAAATTCTGGAAATCTATGCTTTCTCAATGCAACTGTGCAGGCTCTCTTGTCCTGTTCTCCTTTTGTTCAACTTCTGCAAGACTTAAGAACTCGCAACATTCAGAAGGTTGGCTATCCCACATTGACGGCATTCACTGAATTTCTATCTCAATTTGATGTGCCAAGCTCAACCAAATTAAAGAAGAAAGATACAGATGCTTTGGAGACTGGAAGGCCATTCTGCCCAACTATGTTTGTAGATGTTCTAAAAAAGTTTTCTCCGGATTTGCCAAATGTCATGTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTTTGAGCTTTGTAATGGATCAAATGCATGGTGAATTGTTGAAGCTTGAGGGACAGTCTTCAAGTCTTAATGGTAGCAAATCATCTCTAGTTTCTTCTGCTGAAGATGATGAATGGGAAACCGTTGGGCCGAAGAATAAATCTGCTGTAACAAGGACTCAGAGCTTTGTTCCATCAGAATTGAGTGGAATTTTCGGAGGACAACTCAGAAGTTTGGTGAGAGCTAAAGGGAATAGAGCTTCAGCCACTGTTCAACCATATCTCTTGCTCCAGCTTGACATTTATCCTGATGCTGTCCACACAATTGAGGATGCACTTCACCTGTTTTCTGCTCCAGAAACTGTTGAAGGCTACCGAACTACACTCACTGGAAAGCCTGGCGTTGTGACTGCAAGAAAATCTGTACACATTCAGACACTTCCCAAGATATTGATATTGCACCTGGTGCGTTTCGGTTATGGAAGCCAAGGAAGCACTAAGCTACTTAAGCCTGTTCACTTCCCTCTAGAGCTGGTATTGGGTCGAGACTTGCTTGTTTCGCCATCTACTGAGGGTCGAAGATATGAATTAGTTGCCACGATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACTGCCGATGCCCTATACCCTAATGGTCAGTGGCTAAGATTTGATGATGCATCTGTTATTGCCATTGGAGCAAACAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAAGCAGTTGTGA 1617 0.4292 MSDSKVFLFGSFTEDETRSLLQKQSSTPVKDEKPVEKSPLQFGSLNAVSAKSSDPRNSSKAPTSSNVSHSHKCNGVTIVGISLPGSSGSIKENGSSTNYPIVCSILGSANIVKADSVSSVPLLDEDGPTNKIANLSLDASEAGSLNNVWKNDGGHNDSVSKLFNQDSKKTPNGHIVSRVKDLLPRGLINSGNLCFLNATVQALLSCSPFVQLLQDLRTRNIQKVGYPTLTAFTEFLSQFDVPSSTKLKKKDTDALETGRPFCPTMFVDVLKKFSPDLPNVMSGRPRQEDAQEFLSFVMDQMHGELLKLEGQSSSLNGSKSSLVSSAEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLQLDIYPDAVHTIEDALHLFSAPETVEGYRTTLTGKPGVVTARKSVHIQTLPKILILHLVRFGYGSQGSTKLLKPVHFPLELVLGRDLLVSPSTEGRRYELVATITHHGREPSKGHYTADALYPNGQWLRFDDASVIAIGANKVLHDQAYVLFYKQL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01246 538 MobiDBLite consensus disorder prediction 310 324 - -
Aip03g01246 538 MobiDBLite consensus disorder prediction 18 71 - -
Aip03g01246 538 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 185 538 IPR028889 -
Aip03g01246 538 Gene3D Cysteine proteinases 175 537 - -
Aip03g01246 538 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 186 201 IPR018200 GO:0004843|GO:0006511
Aip03g01246 538 Pfam Ubiquitin carboxyl-terminal hydrolase 186 535 IPR001394 GO:0004843|GO:0016579
Aip03g01246 538 MobiDBLite consensus disorder prediction 310 337 - -
Aip03g01246 538 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 538 - -
Aip03g01246 538 MobiDBLite consensus disorder prediction 42 71 - -
Aip03g01246 538 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 480 498 IPR018200 GO:0004843|GO:0006511
Aip03g01246 538 SUPERFAMILY Cysteine proteinases 181 536 IPR038765 -
Aip03g01246 538 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 538 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01246 182 538 Miscellaneous Gene Families AT2G24640 28.610 1.05e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01246 K11841 - gmx:100799656 775.393